Rroxscaffold_6G00411510
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
34065797 .. 34069692
3896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411510.1

Sequence Viewer

Length: 660 bp
ATGGAGATTAGTAACATTGAAATGAAGCTCTCAAAGTTCAGGAGGATTTGTGTGTTCTGTGGGAGTAGCCAAGGCAAGAAGACTAGCTACCAAGATGCTGCCACTGAGCTTGGAAAAGAGCTGGTTTCAAGGAACATTGATCTGGTCTATGGAGGAGGCAGCATAGGCCTAATGGGTTTGGTTTCTCAAGCTGTGCATGATGGTGGTCGGCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGATAACTGGTGAAACTGTGGGGGAAGTGAAGGCAGTTGCAGACATGCATCAAAGAAAGGCAGAGATGGCTAAGCATTCAGATGCCTTTATTGCATTGCCTGGTGGTTATGGAACTCTGGAAGAGTTACTTGAAGTGATAACTTGGGCTCAGCTTGGAATTCATGACAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATTCCTTGCTGTCATTCATTGATACAGCTGTGGAAGAAGGATTTGTTAGCCCAAATGCACGCCACATTATTATATCAGCACCAACAGCAATGGAGTTGGTGAAGAAATTGGAGGATTATGTTCCATGTCATGAAAGAGTTGCTTCAAAGTTGAACTGGGAGATGGGACAGCTTGGCTACACTCAAGAATTCGGTATCTCTAGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

219

Amino Acids

23.98

Weight (kDa)

5.81

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 21 - 146 1.2e-14 SLOG cluster4 family
Lysine_decarbox PF03641 58 - 188 6.3e-50 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37210 AT2G37210 AT3G53450
fragaria_vesca FvH4_6g16020
malus_domestica MD04G1096700.v1.1 MD12G1117700.v1.1
prunus_persica Prupe.6G236000_v2.0.a1 Prupe.6G236000_v2.0.a1
pyrus_communis pycom04g09180 pycom12g11650
rosa_chinensis RchiOBHm_Chr3g0469741
rosa_laevigata RLG00000024325
rosa_multiflora Rmu_sc0010644.1_g000003
rosa_roxburghii Rroxscaffold_6G00411510
rosa_rugosa Rorug03G0103900
rosa_samantha Rh3AG153300
rosa_wichuraiana Rw3G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 408, 641
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 5 cut(s) 20, 129, 383, 600, 607
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 8 cut(s) 28, 87, 109, 121, 191, 403, 482, 625
AluI AGCT 8 cut(s) 28, 87, 109, 121, 191, 403, 482, 625
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 98, 159
ApoI RAATTY 2 cut(s) 408, 641
AsiGI ACCGGT 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 272, 565
AvaI CYCGRG 1 cut(s) 246
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BanII GRGCYC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 85, 171
BccI CCATC 4 cut(s) 194, 310, 437, 610
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 440
BfaI CTAG 2 cut(s) 84, 654
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 2 cut(s) 99, 160
BlpI GCTNAGC 2 cut(s) 321, 399
BlsI GCNGC 2 cut(s) 100, 161
Bme1390I CCNGG 1 cut(s) 351
BmeT110I CYCGRG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 3 cut(s) 85, 307, 322
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 86
Bpu1102I GCTNAGC 2 cut(s) 321, 399
BpuEI CTTGAG 2 cut(s) 171, 621
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 262, 614
Bse3DI GCAATG 2 cut(s) 344, 549
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 70
BseMI GCAATG 2 cut(s) 344, 549
BseMII CTCAG 2 cut(s) 96, 413
BseNI ACTGG 2 cut(s) 262, 614
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 85, 171
BshFI GGCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 633
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 2 cut(s) 321, 399
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 2 cut(s) 97, 412
BspHI TCATGA 2 cut(s) 412, 583
BsrDI GCAATG 2 cut(s) 344, 549
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 2 cut(s) 262, 614
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 3 cut(s) 105, 321, 399
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 165, 317, 341, 539
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 2 cut(s) 215, 298
BstSCI CCNGG 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 85, 171
BstV2I GAAGAC 1 cut(s) 86
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 514
CciI TCATGA 2 cut(s) 412, 583
Cfr10I RCCGGY 1 cut(s) 421
CseI GACGC 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 7 cut(s) 197, 212, 241, 295, 413, 579, 584
DdeI CTNAG 3 cut(s) 105, 321, 399
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 246
EcoRI GAATTC 2 cut(s) 408, 641
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 7 cut(s) 200, 215, 244, 298, 416, 582, 587
FalI AAGNNNNNCTT 4 cut(s) 363, 395, 580, 612
FaqI GGGAC 1 cut(s) 633
FatI CATG 7 cut(s) 196, 211, 240, 294, 412, 578, 583
Fnu4HI GCNGC 2 cut(s) 99, 160
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 2 cut(s) 99, 160
FspBI CTAG 2 cut(s) 84, 654
GluI GCNGC 2 cut(s) 99, 160
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 244
Hin1II CATG 7 cut(s) 200, 215, 244, 298, 416, 582, 587
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 272, 565
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 6 cut(s) 40, 248, 368, 413, 584, 638
HpyAV CCTTC 2 cut(s) 274, 485
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 5 cut(s) 196, 290, 298, 344, 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 317, 341, 539
HpyF3I CTNAG 3 cut(s) 105, 321, 399
Hsp92II CATG 7 cut(s) 200, 215, 244, 298, 416, 582, 587
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 9 cut(s) 25, 107, 128, 243, 336, 353, 363, 435, 595
Lsp1109I GCAGC 2 cut(s) 85, 171
LweI GCATC 3 cut(s) 85, 307, 322
MaeI CTAG 2 cut(s) 84, 654
MaeIII GTNAC 2 cut(s) 11, 375
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 91, 383, 500, 568
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 4 cut(s) 408, 454, 560, 641
MnlI CCTC 5 cut(s) 36, 146, 149, 255, 559
Mph1103I ATGCAT 1 cut(s) 300
MslI CAYNNNNRTG 3 cut(s) 20, 201, 330
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 165, 317, 341, 539
NdeII GATC 1 cut(s) 139
NlaIII CATG 7 cut(s) 200, 215, 244, 298, 416, 582, 587
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 2 cut(s) 215, 298
PaeR7I CTCGAG 1 cut(s) 246
PagI TCATGA 2 cut(s) 412, 583
PceI AGGCCT 1 cut(s) 168
PctI GAATGC 1 cut(s) 325
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 2 cut(s) 100, 161
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 482
RseI CAYNNNNRTG 3 cut(s) 20, 201, 330
SatI GCNGC 2 cut(s) 99, 160
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 400
SetI ASST 9 cut(s) 30, 89, 111, 123, 193, 405, 484, 627, 659
SfaNI GCATC 3 cut(s) 85, 307, 322
Sfr274I CTCGAG 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 3 cut(s) 20, 201, 330
SmlI CTYRAG 3 cut(s) 186, 246, 636
SmoI CTYRAG 3 cut(s) 186, 246, 636
Sse9I AATT 4 cut(s) 408, 454, 560, 641
SseBI AGGCCT 1 cut(s) 168
SspMI CTAG 2 cut(s) 84, 654
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 247
TasI AATT 4 cut(s) 408, 454, 560, 641
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 98, 159
TspDTI ATGAA 4 cut(s) 38, 401, 460, 600
TspRI CASTG 1 cut(s) 109
XapI RAATTY 2 cut(s) 408, 641
XceI RCATGY 2 cut(s) 215, 298
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 2 cut(s) 84, 654
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.