Rorug03G0103900
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
8180917 .. 8182508
1592 bp
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UTR
Exon/CDS
Intron
Rorug03G0103900.1

Sequence Viewer

Length: 600 bp
ATGGGTGATGAAGTTCGCGGACTTTTTCGACCGGGCATTATCTGCAGTGACTTCCGCCCAGTTTCCATGGGTCAAGATGTTCAAGGAGCCAACTGTGGTGAAGATTGCCAATTATTTACTGTTGTAGCGATGGTATTGCAAAGAAAACCTGATGTCTTGATCATTATATTGCCGACATTGAGGGAAACTTCAAAGTATCAAGGACAAGATAACCTTCCAGTAATTGTATGGATGATAGTTCAAGCTAGTGAAGGAGACCTGGCTTTGGCGTTGTATGCATCGACACACAACGTATTGCCTCTAGTTTGTGGCAAAAGTAGTAATCCACAGTCCTGTGATCTTGTTCTGCAGCTAGTTGAGAGAATTTTGTCTATGCCAAAGGCTCGTACCATTTTAGTAAATGGTGCTGTGAGGAAGGGGGAGCATTTGGTGCCACCTTCTGCATTGGATATACTTATAGGAGTTATTTTTCCTGCACCTTCAGCTAGAGTAAAGATTCGGGGCTGTATATCCGACCCTAAGGGACGTGGCTCTTGCTGGCTCACAAGGAAGCAAAGCGATGAAACAAGTTTCACAGCAAATATTGAGTTTTGCTGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

199

Amino Acids

21.67

Weight (kDa)

7.5

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37210 AT2G37210 AT3G53450
fragaria_vesca FvH4_6g16020
malus_domestica MD04G1096700.v1.1 MD12G1117700.v1.1
prunus_persica Prupe.6G236000_v2.0.a1 Prupe.6G236000_v2.0.a1
pyrus_communis pycom04g09180 pycom12g11650
rosa_chinensis RchiOBHm_Chr3g0469741
rosa_laevigata RLG00000024325
rosa_multiflora Rmu_sc0010644.1_g000003
rosa_roxburghii Rroxscaffold_6G00411510
rosa_rugosa Rorug03G0103900
rosa_samantha Rh3AG153300
rosa_wichuraiana Rw3G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 18, 55
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 3 cut(s) 83, 192, 242
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 3 cut(s) 245, 352, 485
AluI AGCT 3 cut(s) 245, 352, 485
Alw26I GTCTC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 17, 110
AxyI CCTNAGG 1 cut(s) 519
BanI GGYRCC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 4 cut(s) 246, 302, 353, 486
BfmI CTRYAG 2 cut(s) 43, 347
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 2 cut(s) 33, 260
BmgBI CACGTC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 88, 432
BmrFI CCNGG 2 cut(s) 33, 260
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 59, 218
Bse21I CCTNAGG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 59, 218
BseXI GCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 537
Bso31I GGTCTC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 159, 337
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 18, 55
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 88, 432
BspMAI CTGCAG 2 cut(s) 47, 351
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 59, 218
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 2 cut(s) 159, 337
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 95, 121, 330
BstAPI GCANNNNNTGC 2 cut(s) 42, 430
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 1 cut(s) 519
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 2 cut(s) 162, 340
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 159, 337
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 4 cut(s) 42, 275, 430, 482
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 31, 258
BstSFI CTRYAG 2 cut(s) 43, 347
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 2 cut(s) 143, 573
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 539
Csp6I GTAC 1 cut(s) 387
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 89, 245, 263, 352, 383, 485, 504, 531, 541
CviKI_1 RGCY 9 cut(s) 89, 245, 263, 352, 383, 485, 504, 531, 541
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 161, 339
DpnII GATC 2 cut(s) 159, 337
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 465
Eco81I CCTNAGG 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 70
FaiI YATR 8 cut(s) 68, 167, 229, 276, 374, 452, 458, 509
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 537
FatI CATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 350
FspBI CTAG 4 cut(s) 246, 302, 353, 486
GluI GCNGC 1 cut(s) 350
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 496
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 17, 110
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 2 cut(s) 74, 157
HpyAV CCTTC 5 cut(s) 224, 245, 409, 447, 489
HpyCH4III ACNGT 3 cut(s) 95, 121, 330
HpyCH4IV ACGT 2 cut(s) 291, 526
HpyCH4V TGCA 6 cut(s) 45, 139, 278, 349, 443, 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 275, 430, 482
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 2 cut(s) 291, 526
Hsp92II CATG 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 337
LmnI GCTCC 2 cut(s) 86, 421
LpnPI CCDG 9 cut(s) 45, 72, 162, 231, 245, 272, 346, 486, 523
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 287
MaeI CTAG 4 cut(s) 246, 302, 353, 486
MaeII ACGT 2 cut(s) 291, 526
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 161, 339
MboI GATC 2 cut(s) 159, 337
MboII GAAGA 1 cut(s) 113
MluCI AATT 3 cut(s) 110, 222, 363
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 3 cut(s) 174, 309, 405
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 1 cut(s) 598
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 33, 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 42, 275, 430, 482
NciI CCSGG 1 cut(s) 33
NcoI CCATGG 1 cut(s) 66
NdeII GATC 2 cut(s) 159, 337
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 88, 432
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 88, 432
PstI CTGCAG 2 cut(s) 47, 351
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 598
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 2 cut(s) 159, 337
ScrFI CCNGG 2 cut(s) 33, 260
SfaNI GCATC 1 cut(s) 287
SfcI CTRYAG 2 cut(s) 43, 347
Sse9I AATT 3 cut(s) 110, 222, 363
SsiI CCGC 2 cut(s) 18, 55
SspI AATATT 1 cut(s) 583
SspMI CTAG 4 cut(s) 246, 302, 353, 486
StyD4I CCNGG 2 cut(s) 31, 258
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 3 cut(s) 95, 121, 330
TaiI ACGT 2 cut(s) 294, 529
TaqI TCGA 2 cut(s) 28, 281
TasI AATT 3 cut(s) 110, 222, 363
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 1 cut(s) 598
Tru9I TTAA 1 cut(s) 598
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 24, 576
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XspI CTAG 4 cut(s) 246, 302, 353, 486
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.