AT3G53450
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
19812977 .. 19815666
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53450.1

Sequence Viewer

Length: 648 bp
ATGGAGGTCAACAATGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTTTGTGGAAGCAGCCAAGGCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACGAATTGGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCGCAAGCTGTTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAGAGTTGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCATCAAAGAAAAGCAGAGATGGCTAGACACTCTGATGCTTTTATTGCTTTACCAGGTGGATATGGAACACTTGAAGAGCTTTTGGAGGTCATAACATGGGCTCAGCTTGGAATACATGATAAACCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTTCATTGATAAAGCCGTTGAAGAAGGCTTCATCAGTACAAACGCACGCCAGATCATAATTTCTGCACCTACTGCCAAGGAGCTTGTAAAGAAGCTGGAGGAATATTCGCCTTGCCATGAAAGTGTTGCGACTAAGCTTTGTTGGGAGATAGAGCGGATTGACTACTCTTCTGAAGACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

23.54

Weight (kDa)

5.19

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 21 - 146 1.3e-13 SLOG cluster4 family
Lysine_decarbox PF03641 58 - 188 6e-50 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013801)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37210 AT2G37210 AT3G53450
fragaria_vesca FvH4_6g16020
malus_domestica MD04G1096700.v1.1 MD12G1117700.v1.1
prunus_persica Prupe.6G236000_v2.0.a1 Prupe.6G236000_v2.0.a1
pyrus_communis pycom04g09180 pycom12g11650
rosa_chinensis RchiOBHm_Chr3g0469741
rosa_laevigata RLG00000024325
rosa_multiflora Rmu_sc0010644.1_g000003
rosa_roxburghii Rroxscaffold_6G00411510
rosa_rugosa Rorug03G0103900
rosa_samantha Rh3AG153300
rosa_wichuraiana Rw3G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 622
AciI CCGC 1 cut(s) 622
AclWI GGATC 1 cut(s) 114
AfaI GTAC 1 cut(s) 505
AgeI ACCGGT 2 cut(s) 257, 421
AgsI TTSAA 2 cut(s) 371, 488
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 6 cut(s) 191, 376, 403, 550, 562, 604
AluI AGCT 6 cut(s) 191, 376, 403, 550, 562, 604
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 66, 98
AsiGI ACCGGT 2 cut(s) 257, 421
AsuHPI GGTGA 1 cut(s) 272
BanII GRGCYC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbvI GCAGC 2 cut(s) 78, 85
BccI CCATC 4 cut(s) 166, 194, 310, 437
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 440
BfaI CTAG 4 cut(s) 110, 143, 246, 321
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 2 cut(s) 67, 99
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 2 cut(s) 68, 100
Bme1390I CCNGG 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 3 cut(s) 85, 307, 322
BpmI CTGGAG 1 cut(s) 584
Bpu1102I GCTNAGC 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 70, 543
BsaWI WCCGGW 2 cut(s) 257, 421
Bse118I RCCGGY 2 cut(s) 257, 421
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 70, 543
BseJI GATNNNNATC 1 cut(s) 297
BseMII CTCAG 1 cut(s) 413
BseXI GCAGC 2 cut(s) 78, 85
BsgI GTGCAG 1 cut(s) 516
BshTI ACCGGT 2 cut(s) 257, 421
BsiSI CCGG 2 cut(s) 258, 422
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 3 cut(s) 106, 139, 519
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 1 cut(s) 622
BspCNI CTCAG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 196
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 366
BsrBI CCGCTC 1 cut(s) 622
BsrFI RCCGGY 2 cut(s) 257, 421
BssAI RCCGGY 2 cut(s) 257, 421
BssECI CCNNGG 2 cut(s) 70, 543
BssMI GATC 3 cut(s) 106, 139, 519
BssT1I CCWWGG 2 cut(s) 70, 543
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 3 cut(s) 74, 366, 640
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 189, 514
BstDEI CTNAG 2 cut(s) 399, 600
BstKTI GATC 3 cut(s) 109, 142, 522
BstMBI GATC 3 cut(s) 106, 139, 519
BstMWI GCNNNNNNNGC 4 cut(s) 72, 317, 341, 539
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 78, 85
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 218
BstYI RGATCY 1 cut(s) 106
BsuI GTATCC 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 189, 514
CciI TCATGA 1 cut(s) 196
Cfr10I RCCGGY 2 cut(s) 257, 421
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 1 cut(s) 504
CspAI ACCGGT 2 cut(s) 257, 421
CviAII CATG 7 cut(s) 22, 197, 212, 241, 393, 413, 584
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 2 cut(s) 399, 600
DpnI GATC 3 cut(s) 108, 141, 521
DpnII GATC 3 cut(s) 106, 139, 519
Eam1104I CTCTTC 3 cut(s) 74, 366, 640
EarI CTCTTC 3 cut(s) 74, 366, 640
Eco130I CCWWGG 2 cut(s) 70, 543
Eco24I GRGCYC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 70, 543
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 2 cut(s) 70, 543
FaeI CATG 7 cut(s) 25, 200, 215, 244, 396, 416, 587
FatI CATG 7 cut(s) 21, 196, 211, 240, 392, 412, 583
Fnu4HI GCNGC 2 cut(s) 67, 99
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 2 cut(s) 67, 99
FspBI CTAG 4 cut(s) 110, 143, 246, 321
GluI GCNGC 2 cut(s) 67, 99
GsuI CTGGAG 1 cut(s) 584
HapII CCGG 2 cut(s) 258, 422
Hin1II CATG 7 cut(s) 25, 200, 215, 244, 396, 416, 587
HincII GTYRAC 2 cut(s) 10, 255
HindII GTYRAC 2 cut(s) 10, 255
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 1 cut(s) 45
HpaII CCGG 2 cut(s) 258, 422
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 10, 255
Hpy188I TCNGA 2 cut(s) 331, 640
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 10, 255
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 25, 290, 298, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 317, 341, 539
HpyF3I CTNAG 2 cut(s) 399, 600
Hsp92II CATG 7 cut(s) 25, 200, 215, 244, 396, 416, 587
Kzo9I GATC 3 cut(s) 106, 139, 519
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 6 cut(s) 271, 336, 363, 435, 530, 548
Lsp1109I GCAGC 2 cut(s) 78, 85
LweI GCATC 3 cut(s) 85, 307, 322
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 4 cut(s) 110, 143, 246, 321
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 108, 141, 521
MbiI CCGCTC 1 cut(s) 622
MboI GATC 3 cut(s) 106, 139, 519
MboII GAAGA 5 cut(s) 54, 91, 383, 500, 627
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 2 cut(s) 119, 525
MnlI CCTC 3 cut(s) 146, 376, 559
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 3 cut(s) 201, 330, 588
MspI CCGG 2 cut(s) 258, 422
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 72, 317, 341, 539
NdeII GATC 3 cut(s) 106, 139, 519
NlaIII CATG 7 cut(s) 25, 200, 215, 244, 396, 416, 587
NsiI ATGCAT 1 cut(s) 300
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 45
PinAI ACCGGT 2 cut(s) 257, 421
PkrI GCNGC 2 cut(s) 68, 100
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 3 cut(s) 201, 330, 588
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 67, 99
Sau3AI GATC 3 cut(s) 106, 139, 519
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 400
SexAI ACCWGGT 1 cut(s) 349
SfaNI GCATC 3 cut(s) 85, 307, 322
SmiMI CAYNNNNRTG 3 cut(s) 201, 330, 588
Sse9I AATT 2 cut(s) 119, 525
SsiI CCGC 1 cut(s) 622
SspI AATATT 1 cut(s) 572
SspMI CTAG 4 cut(s) 110, 143, 246, 321
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 2 cut(s) 70, 543
TaaI ACNGT 1 cut(s) 268
TasI AATT 2 cut(s) 119, 525
TatI WGTACW 1 cut(s) 503
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 2 cut(s) 66, 98
TspDTI ATGAA 5 cut(s) 30, 185, 460, 487, 600
XspI CTAG 4 cut(s) 110, 143, 246, 321
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.