AT2G37530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016545
Physical Location & Seq
Forward (+)
15750915 .. 15751672
758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37530.1

Sequence Viewer

Length: 369 bp
ATGATTCGCCATATGTTCTCCTCTCTGACTCACAGATTCGCATGGCGGATTCCACACTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGTTAACGGTGGCTATCATCTCGCTTGCACCGGAATTCGCTTTCGTGTCGGCGATTTTCCCGTCTTCTTCTGAGGTGTTCTCGCGGCGGTGCGGTTCTTATGCAGCCATATTGGTTCCGCTGGATCTTCCCTCGGAGGTCTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGACCTCGTTGTGCCGCCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTAAGGACTATGGGCCTTTGGGAGGCCGACGAAGCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.57

Weight (kDa)

7.89

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37530
fragaria_vesca FvH4_6g14180
malus_domestica MD04G1123500.v1.1 MD12G1139400.v1.1
prunus_persica Prupe.6G251200_v2.0.a1
pyrus_communis pycom04g11140
rosa_chinensis RchiOBHm_Chr3g0467161
rosa_laevigata RLG00000024523
rosa_multiflora Rmu_sc0000962.1_g000079 Rmu_sc0018989.1_g000004
rosa_roxburghii Rroxscaffold_6G00413860
rosa_rugosa Rorug03G0085500
rosa_samantha Rh3BG155000
rosa_wichuraiana Rw3G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 255
AciI CCGC 7 cut(s) 46, 175, 178, 183, 209, 284, 318
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 349
AlwI GGATC 1 cut(s) 222
Aor13HI TCCGGA 1 cut(s) 255
AoxI GGCC 2 cut(s) 340, 351
ApeKI GCWGC 2 cut(s) 194, 296
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 271, 340
AvaII GGWCC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 206, 308
BccI CCATC 1 cut(s) 262
BceAI ACGGC 2 cut(s) 82, 305
BisI GCNGC 4 cut(s) 176, 195, 284, 297
BlsI GCNGC 4 cut(s) 177, 196, 285, 298
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 271, 340
BmiI GGNNCC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 2 cut(s) 121, 255
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 2 cut(s) 241, 286
BseAI TCCGGA 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 206, 308
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 342, 353
BsiSI CCGG 4 cut(s) 122, 242, 256, 287
BslI CCNNNNNNNGG 1 cut(s) 349
BsnI GGCC 2 cut(s) 342, 353
Bsp13I TCCGGA 1 cut(s) 255
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 7 cut(s) 46, 175, 178, 183, 209, 284, 318
BspANI GGCC 2 cut(s) 342, 353
BspCNI CTCAG 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 255
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 222
BsrFI RCCGGY 2 cut(s) 241, 286
BssAI RCCGGY 2 cut(s) 241, 286
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 347
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 317, 359
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 206, 308
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 2 cut(s) 342, 353
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 2 cut(s) 241, 286
Cfr13I GGNCC 2 cut(s) 271, 340
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 1 cut(s) 42
CviJI RGCY 6 cut(s) 104, 197, 311, 342, 353, 362
CviKI_1 RGCY 6 cut(s) 104, 197, 311, 342, 353, 362
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EciI GGCGGA 2 cut(s) 61, 307
Eco47I GGWCC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 125
FaeI CATG 1 cut(s) 45
FaiI YATR 6 cut(s) 12, 14, 43, 192, 200, 338
FatI CATG 1 cut(s) 41
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 176, 195, 284, 297
Fsp4HI GCNGC 4 cut(s) 176, 195, 284, 297
GlaI GCGC 1 cut(s) 70
GluI GCNGC 4 cut(s) 176, 195, 284, 297
HaeIII GGCC 2 cut(s) 342, 353
HapII CCGG 4 cut(s) 122, 242, 256, 287
HhaI GCGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 5 cut(s) 4, 28, 36, 49, 247
HpaI GTTAAC 1 cut(s) 96
HpaII CCGG 4 cut(s) 122, 242, 256, 287
Hpy166II GTNNAC 4 cut(s) 64, 78, 96, 239
Hpy188I TCNGA 4 cut(s) 27, 90, 163, 226
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 4 cut(s) 64, 78, 96, 239
Hpy99I CGWCG 3 cut(s) 326, 329, 359
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 3 cut(s) 74, 80, 92
HpyCH4V TGCA 3 cut(s) 119, 194, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 359
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 3 cut(s) 74, 80, 92
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 1 cut(s) 69
Kpn2I TCCGGA 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 135, 197, 255, 269, 300
Lsp1109I GCAGC 2 cut(s) 206, 308
MaeII ACGT 3 cut(s) 74, 80, 92
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 4 cut(s) 147, 150, 209, 277
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 214
MluCI AATT 2 cut(s) 125, 300
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 7 cut(s) 31, 157, 220, 232, 252, 284, 343
MroI TCCGGA 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 95, 367
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 4 cut(s) 122, 242, 256, 287
MunI CAATTG 1 cut(s) 300
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 317, 359
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 4 cut(s) 4, 36, 49, 247
PkrI GCNGC 4 cut(s) 177, 196, 285, 298
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 271, 340
PsuI RGATCY 1 cut(s) 214
SaqAI TTAA 2 cut(s) 95, 367
SatI GCNGC 4 cut(s) 176, 195, 284, 297
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 271, 340
SchI GAGTC 1 cut(s) 22
SetI ASST 7 cut(s) 77, 83, 95, 168, 231, 263, 276
SinI GGWCC 1 cut(s) 271
Sse9I AATT 2 cut(s) 125, 300
SsiI CCGC 7 cut(s) 46, 175, 178, 183, 209, 284, 318
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 3 cut(s) 77, 83, 95
TaqI TCGA 1 cut(s) 263
TasI AATT 2 cut(s) 125, 300
TauI GCSGC 2 cut(s) 178, 286
TfiI GAWTC 4 cut(s) 4, 36, 49, 247
Tru1I TTAA 2 cut(s) 95, 367
Tru9I TTAA 2 cut(s) 95, 367
TseI GCWGC 2 cut(s) 194, 296
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.