Rroxscaffold_6G00413860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016545
Physical Location & Seq
Forward (+)
36177625 .. 36178531
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413860.1

Sequence Viewer

Length: 474 bp
ATGCTCCCCTCGTTCTTCACCTCCACCCTCACGCGCCTCACGCCCCGCCTGCCGGTGCTAATCTTCGCCGCCACGTGGACCGCCTGCCTCACTCTCACGGTGGCTATGGCCTCCTTCTCTCCCGAGGTTGCGTTTGTCTCGGCCATTTCTTCTTCGTCTTCGTGCGGCTCGGAATCGTCCATAAGGATTCTGGCAGACGTACCGGGAGATATTCTCTGCCTGCCGGCTCAGCTGTTCAGCAAGTCCAGGATCGACTTCATCGTGCCTCCGGTTTTCGCGGCGGTCGTGGTGGCTGGGTCGGCGTGCCTGGTCCGGGCCATGGGCCTGTGGGAGGCAGACGAAGCCCAAGCTGCTCCGCTTCTCGGAATTCCACCATCTATGAGTGATGCGGCAAAGAACTACATTTGTCATTCGGAAATCCAATGTAAGCTGACAGAAACGGAGCTACCTAGCTCTGTGGGCAGGCTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.53

Weight (kDa)

4.99

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37530
fragaria_vesca FvH4_6g14180
malus_domestica MD04G1123500.v1.1 MD12G1139400.v1.1
prunus_persica Prupe.6G251200_v2.0.a1
pyrus_communis pycom04g11140
rosa_chinensis RchiOBHm_Chr3g0467161
rosa_laevigata RLG00000024523
rosa_multiflora Rmu_sc0000962.1_g000079 Rmu_sc0018989.1_g000004
rosa_roxburghii Rroxscaffold_6G00413860
rosa_rugosa Rorug03G0085500
rosa_samantha Rh3BG155000
rosa_wichuraiana Rw3G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 34, 278
AciI CCGC 8 cut(s) 46, 69, 81, 165, 278, 281, 356, 389
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 366
AcvI CACGTG 1 cut(s) 75
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 6 cut(s) 52, 75, 313, 319, 331, 362
AjnI CCWGG 2 cut(s) 245, 306
AluBI AGCT 5 cut(s) 232, 350, 430, 445, 453
AluI AGCT 5 cut(s) 232, 350, 430, 445, 453
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 108, 141, 315, 322
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 366
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 4 cut(s) 78, 310, 315, 322
AsuC2I CCSGG 2 cut(s) 204, 314
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 78, 310
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 337
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 2 cut(s) 247, 308
BcnI CCSGG 2 cut(s) 204, 314
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 450
BisI GCNGC 5 cut(s) 69, 166, 279, 351, 390
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 5 cut(s) 70, 167, 280, 352, 391
Bme1390I CCNGG 4 cut(s) 204, 247, 308, 314
Bme18I GGWCC 2 cut(s) 78, 310
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 4 cut(s) 78, 310, 315, 322
BmrFI CCNGG 4 cut(s) 204, 247, 308, 314
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu1102I GCTNAGC 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 204, 314
BsaAI YACGTR 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 123, 318
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 75, 313, 319, 331, 362
Bse118I RCCGGY 2 cut(s) 52, 223
BseBI CCWGG 2 cut(s) 247, 308
BseDI CCNNGG 2 cut(s) 123, 318
BseLI CCNNNNNNNGG 6 cut(s) 52, 75, 313, 319, 331, 362
BseMII CTCAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 293
Bsh1236I CGCG 2 cut(s) 34, 278
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 4 cut(s) 110, 143, 317, 324
BsiEI CGRYCG 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 5 cut(s) 53, 203, 224, 269, 313
BslI CCNNNNNNNGG 6 cut(s) 52, 75, 313, 319, 331, 362
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 4 cut(s) 110, 143, 317, 324
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 8 cut(s) 46, 69, 81, 165, 278, 281, 356, 389
BspANI GGCC 4 cut(s) 110, 143, 317, 324
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 34, 278
BspPI GGATC 1 cut(s) 257
BsrFI RCCGGY 2 cut(s) 52, 223
BssAI RCCGGY 2 cut(s) 52, 223
BssECI CCNNGG 2 cut(s) 123, 318
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 247, 308
Bst4CI ACNGT 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 6 cut(s) 50, 85, 221, 225, 304, 464
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 329
BstFNI CGCG 2 cut(s) 34, 278
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 7 cut(s) 40, 49, 229, 299, 341, 350, 459
BstNI CCWGG 2 cut(s) 247, 308
BstSCI CCNGG 4 cut(s) 202, 245, 306, 312
BstUI CGCG 2 cut(s) 34, 278
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 4 cut(s) 110, 143, 317, 324
BtgI CCRYGG 1 cut(s) 318
Cac8I GCNNGC 6 cut(s) 50, 85, 221, 225, 304, 464
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 52, 223
Cfr13I GGNCC 4 cut(s) 78, 310, 315, 322
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 319
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 78, 310
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 245, 306
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 322
FaiI YATR 5 cut(s) 107, 182, 320, 380, 472
FatI CATG 1 cut(s) 318
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 5 cut(s) 69, 166, 279, 351, 390
Fsp4HI GCNGC 5 cut(s) 69, 166, 279, 351, 390
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 69, 166, 279, 351, 390
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 4 cut(s) 110, 143, 317, 324
HapII CCGG 5 cut(s) 53, 203, 224, 269, 313
HhaI GCGC 1 cut(s) 36
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 2 cut(s) 173, 187
HpaII CCGG 5 cut(s) 53, 203, 224, 269, 313
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 3 cut(s) 172, 365, 415
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 74, 198
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 49, 229, 299, 341, 350, 459
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 2 cut(s) 74, 198
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 1 cut(s) 34
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 3 cut(s) 9, 358, 442
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 74, 198
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 5 cut(s) 7, 55, 141, 144, 150
MluCI AATT 1 cut(s) 366
MnlI CCTC 9 cut(s) 19, 31, 38, 47, 98, 118, 121, 276, 325
MroNI GCCGGC 1 cut(s) 223
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 5 cut(s) 53, 203, 224, 269, 313
MspR9I CCNGG 4 cut(s) 204, 247, 308, 314
MvaI CCWGG 2 cut(s) 247, 308
MvnI CGCG 2 cut(s) 34, 278
MwoI GCNNNNNNNGC 7 cut(s) 40, 49, 229, 299, 341, 350, 459
NaeI GCCGGC 1 cut(s) 225
NciI CCSGG 2 cut(s) 204, 314
NcoI CCATGG 1 cut(s) 318
NdeII GATC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 282
PdiI GCCGGC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 173, 187
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 5 cut(s) 70, 167, 280, 352, 391
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 245, 306
PspCI CACGTG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 2 cut(s) 245, 306
PspPI GGNCC 4 cut(s) 78, 310, 315, 322
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SatI GCNGC 5 cut(s) 69, 166, 279, 351, 390
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 4 cut(s) 78, 310, 315, 322
ScrFI CCNGG 4 cut(s) 204, 247, 308, 314
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 2 cut(s) 78, 310
Sse9I AATT 1 cut(s) 366
SsiI CCGC 8 cut(s) 46, 69, 81, 165, 278, 281, 356, 389
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 4 cut(s) 202, 245, 306, 312
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 77, 201
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 366
TauI GCSGC 4 cut(s) 71, 168, 281, 392
TfiI GAWTC 2 cut(s) 173, 187
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 78, 310
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.