FvH4_6g14180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016545
Physical Location & Seq
Reverse (-)
8711274 .. 8712012
739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14180.t1

Sequence Viewer

Length: 351 bp
ATGCTCCCCTCCCTCTTCACCTCCACCCTCACGCGCCTCACGCCCCGCCTGCCGGTCTTAGTCTTCGCCGCCACGTGGACAGCCTGCCTCACTCTCACGGTGGCTCTCGCCTCCTTCTCCCCCGAGGTTGCGTTTGTCTCGGCCATTTCTTCGTCGTCTTCATGCGGCTCGGAAGCGTCTATTAGGGTGCTGGCTGACGTGCCGGGAGATATTCTCTGCTTGCCGGCTAACCTGTTCAGCAAGTCCAAGATTGATCTCATCGTTCCTCCGGTCTTCGCGGCGGTTGTGGTGGCCGGCTCGGCGTTTCTGGTCCGAGCCCTGGGGTTGTGGGAGGCAGACGAAGCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.08

Weight (kDa)

5.08

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37530
fragaria_vesca FvH4_6g14180
malus_domestica MD04G1123500.v1.1 MD12G1139400.v1.1
prunus_persica Prupe.6G251200_v2.0.a1
pyrus_communis pycom04g11140
rosa_chinensis RchiOBHm_Chr3g0467161
rosa_laevigata RLG00000024523
rosa_multiflora Rmu_sc0000962.1_g000079 Rmu_sc0018989.1_g000004
rosa_roxburghii Rroxscaffold_6G00413860
rosa_rugosa Rorug03G0085500
rosa_samantha Rh3BG155000
rosa_wichuraiana Rw3G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 34, 278
AciI CCGC 5 cut(s) 46, 69, 165, 278, 281
AcoI YGGCCR 2 cut(s) 141, 291
AcvI CACGTG 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 52, 75, 319
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 141, 291
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 319
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 3 cut(s) 55, 150, 265
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 3 cut(s) 69, 166, 279
BlsI GCNGC 3 cut(s) 70, 167, 280
Bme1390I CCNGG 2 cut(s) 204, 320
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 204, 320
BpiI GAAGAC 3 cut(s) 55, 150, 265
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpuMI CCSGG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 123, 318, 319
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 75, 319
Bse118I RCCGGY 3 cut(s) 52, 223, 293
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 3 cut(s) 123, 318, 319
BseLI CCNNNNNNNGG 3 cut(s) 52, 75, 319
Bsh1236I CGCG 2 cut(s) 34, 278
BshFI GGCC 2 cut(s) 143, 293
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 5 cut(s) 53, 203, 224, 269, 294
BslI CCNNNNNNNGG 3 cut(s) 52, 75, 319
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 143, 293
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 5 cut(s) 46, 69, 165, 278, 281
BspANI GGCC 2 cut(s) 143, 293
BspFNI CGCG 2 cut(s) 34, 278
BsrFI RCCGGY 3 cut(s) 52, 223, 293
BssAI RCCGGY 3 cut(s) 52, 223, 293
BssECI CCNNGG 3 cut(s) 123, 318, 319
BssMI GATC 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 6 cut(s) 50, 85, 192, 221, 225, 295
BstDEI CTNAG 1 cut(s) 58
BstFNI CGCG 2 cut(s) 34, 278
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 40, 49, 299, 341
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 202, 318
BstUI CGCG 2 cut(s) 34, 278
BstV2I GAAGAC 3 cut(s) 55, 150, 265
BsuRI GGCC 2 cut(s) 143, 293
BtrI CACGTC 1 cut(s) 199
Cac8I GCNNGC 6 cut(s) 50, 85, 192, 221, 225, 295
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 3 cut(s) 52, 223, 293
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 165
CviAII CATG 1 cut(s) 162
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
EaeI YGGCCR 2 cut(s) 141, 291
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 310
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 319
FaeI CATG 1 cut(s) 165
FaiI YATR 1 cut(s) 163
FatI CATG 1 cut(s) 161
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 3 cut(s) 69, 166, 279
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 69, 166, 279
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 69, 166, 279
HaeIII GGCC 2 cut(s) 143, 293
HapII CCGG 5 cut(s) 53, 203, 224, 269, 294
HgaI GACGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 36
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HpaII CCGG 5 cut(s) 53, 203, 224, 269, 294
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 2 cut(s) 172, 314
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 74, 198
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 49, 299, 341
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 74, 198
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 1 cut(s) 34
KroI GCCGGC 2 cut(s) 223, 293
KroNI GCCGGC 2 cut(s) 225, 295
Kzo9I GATC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 9
MaeII ACGT 2 cut(s) 74, 198
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 5 cut(s) 7, 55, 141, 150, 265
MhlI GDGCHC 1 cut(s) 319
MroNI GCCGGC 2 cut(s) 223, 293
MspI CCGG 5 cut(s) 53, 203, 224, 269, 294
MspR9I CCNGG 2 cut(s) 204, 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 2 cut(s) 34, 278
MwoI GCNNNNNNNGC 4 cut(s) 40, 49, 299, 341
NaeI GCCGGC 2 cut(s) 225, 295
NciI CCSGG 1 cut(s) 204
NdeII GATC 1 cut(s) 253
NgoMIV GCCGGC 2 cut(s) 223, 293
NlaIII CATG 1 cut(s) 165
NmeAIII GCCGAG 2 cut(s) 119, 278
PasI CCCWGGG 1 cut(s) 319
PdiI GCCGGC 2 cut(s) 225, 295
PkrI GCNGC 3 cut(s) 70, 167, 280
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 318
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 318
PspPI GGNCC 1 cut(s) 310
SatI GCNGC 3 cut(s) 69, 166, 279
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 204, 320
SduI GDGCHC 1 cut(s) 319
SetI ASST 5 cut(s) 23, 77, 129, 201, 234
SinI GGWCC 1 cut(s) 310
SsiI CCGC 5 cut(s) 46, 69, 165, 278, 281
StyD4I CCNGG 2 cut(s) 202, 318
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 77, 201
TauI GCSGC 3 cut(s) 71, 168, 281
TspDTI ATGAA 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.