Prupe.6G251200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016545
Physical Location & Seq
Forward (+)
24602292 .. 24603215
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G251200.1

Sequence Viewer

Length: 363 bp
ATGCTCCGCTCGCTCTTTACCTCCACCCTCACGACCCTCTCCTTGCGCTGGCCAGTGCTAGTCTACGCCGCCACGTGGACCACATTGCTCACTCTGACGGTGGCCGTGGCCTCCTTCTCCCCCGAGGTCGCGTTCGTCTCCTCCATTTCGTCGACGTCTTCCTTCTCCCGCGCCTGCGACTCGGAAGGCTCCGTTAGGGTTCCGTCGGACGTGCCGGGAGATATCCTGTGCTTGCCGGCTCACCTGTTCAGCAAGTCCAGCATCGATTTCATCGTGCCCCCTGTTTTCGCGGCGGTTGTGGTGGCTGGGTCGGCTTTCCTGGTTCGAGCCGTGGGCTTGTGGGAGACTGATGAGGTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.74

Weight (kDa)

4.79

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37530
fragaria_vesca FvH4_6g14180
malus_domestica MD04G1123500.v1.1 MD12G1139400.v1.1
prunus_persica Prupe.6G251200_v2.0.a1
pyrus_communis pycom04g11140
rosa_chinensis RchiOBHm_Chr3g0467161
rosa_laevigata RLG00000024523
rosa_multiflora Rmu_sc0000962.1_g000079 Rmu_sc0018989.1_g000004
rosa_roxburghii Rroxscaffold_6G00413860
rosa_rugosa Rorug03G0085500
rosa_samantha Rh3BG155000
rosa_wichuraiana Rw3G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 2 cut(s) 63, 152
AccII CGCG 3 cut(s) 131, 171, 290
AciI CCGC 5 cut(s) 7, 69, 169, 290, 293
AcoI YGGCCR 2 cut(s) 50, 102
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 48, 75
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 142, 338
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 3 cut(s) 50, 102, 108
AspLEI GCGC 2 cut(s) 48, 173
AspS9I GGNCC 2 cut(s) 78, 355
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 78, 355
BaeGI GKGCMC 1 cut(s) 279
BalI TGGCCA 1 cut(s) 52
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 150
BceAI ACGGC 2 cut(s) 89, 314
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 142, 338
BfaI CTAG 1 cut(s) 59
BisI GCNGC 2 cut(s) 69, 291
BlsI GCNGC 2 cut(s) 70, 292
Bme1390I CCNGG 2 cut(s) 216, 320
Bme18I GGWCC 2 cut(s) 78, 355
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 78, 355
BmiI GGNNCC 3 cut(s) 190, 201, 357
BmrFI CCNGG 2 cut(s) 216, 320
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 105, 123, 330
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 75
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 105, 123, 330
BseLI CCNNNNNNNGG 2 cut(s) 48, 75
BseMI GCAATG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 3 cut(s) 131, 171, 290
BshFI GGCC 3 cut(s) 52, 104, 110
BshVI ATCGAT 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 215, 236
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 48, 75
BsmAI GTCTC 2 cut(s) 142, 338
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 3 cut(s) 52, 104, 110
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 279
BspACI CCGC 5 cut(s) 7, 69, 169, 290, 293
BspANI GGCC 3 cut(s) 52, 104, 110
BspDI ATCGAT 1 cut(s) 264
BspFNI CGCG 3 cut(s) 131, 171, 290
BspLI GGNNCC 3 cut(s) 190, 201, 357
BsrBI CCGCTC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 105, 123, 330
BssNI GRCGYC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 5 cut(s) 11, 50, 175, 233, 237
BstDSI CCRYGG 2 cut(s) 105, 330
BstFNI CGCG 3 cut(s) 131, 171, 290
BstHHI GCGC 2 cut(s) 48, 173
BstMAI GTCTC 2 cut(s) 142, 338
BstMWI GCNNNNNNNGC 3 cut(s) 10, 258, 311
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 214, 318
BstSLI GKGCMC 1 cut(s) 279
BstUI CGCG 3 cut(s) 131, 171, 290
BstV2I GAAGAC 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 3 cut(s) 52, 104, 110
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 2 cut(s) 105, 330
BtrI CACGTC 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 5 cut(s) 11, 50, 175, 233, 237
CfoI GCGC 2 cut(s) 48, 173
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 78, 355
ClaI ATCGAT 1 cut(s) 264
CviJI RGCY 9 cut(s) 52, 104, 110, 189, 239, 305, 314, 329, 336
CviKI_1 RGCY 9 cut(s) 52, 104, 110, 189, 239, 305, 314, 329, 336
EaeI YGGCCR 2 cut(s) 50, 102
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 78, 355
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 318
EcoRV GATATC 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 142
FaqI GGGAC 1 cut(s) 341
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 2 cut(s) 63, 152
Fnu4HI GCNGC 2 cut(s) 69, 291
Fsp4HI GCNGC 2 cut(s) 69, 291
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 47, 172
GluI GCNGC 2 cut(s) 69, 291
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 52, 104, 110
HapII CCGG 2 cut(s) 215, 236
HhaI GCGC 2 cut(s) 48, 173
Hin1I GRCGYC 1 cut(s) 155
Hin6I GCGC 2 cut(s) 46, 171
HinP1I GCGC 2 cut(s) 46, 171
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 215, 236
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 3 cut(s) 64, 78, 153
Hpy188I TCNGA 3 cut(s) 96, 184, 208
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 3 cut(s) 64, 78, 153
Hpy99I CGWCG 3 cut(s) 154, 157, 208
HpyAV CCTTC 3 cut(s) 124, 172, 179
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 3 cut(s) 74, 155, 210
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 258, 311
HpySE526I ACGT 3 cut(s) 74, 155, 210
Hsp92I GRCGYC 1 cut(s) 155
HspAI GCGC 2 cut(s) 46, 171
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 9, 194
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 59
MaeII ACGT 3 cut(s) 74, 155, 210
MbiI CCGCTC 1 cut(s) 9
MboII GAAGA 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 52
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 7 cut(s) 31, 38, 47, 118, 121, 151, 346
Mox20I TGGCCA 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 235
MscI TGGCCA 1 cut(s) 52
Msp20I TGGCCA 1 cut(s) 52
MspI CCGG 2 cut(s) 215, 236
MspR9I CCNGG 2 cut(s) 216, 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 3 cut(s) 131, 171, 290
MwoI GCNNNNNNNGC 3 cut(s) 10, 258, 311
NaeI GCCGGC 1 cut(s) 237
NciI CCSGG 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 235
NlaIV GGNNCC 3 cut(s) 190, 201, 357
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 70, 292
PleI GAGTC 1 cut(s) 173
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 318
PspCI CACGTG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 190, 201, 357
PspPI GGNCC 2 cut(s) 78, 355
PspPPI RGGWCCY 1 cut(s) 355
SalI GTCGAC 1 cut(s) 151
SatI GCNGC 2 cut(s) 69, 291
Sau96I GGNCC 2 cut(s) 78, 355
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 216, 320
SduI GDGCHC 1 cut(s) 279
SetI ASST 7 cut(s) 23, 77, 129, 158, 213, 246, 357
SfaNI GCATC 1 cut(s) 270
SgrDI CGTCGACG 1 cut(s) 151
SinI GGWCC 2 cut(s) 78, 355
SsiI CCGC 5 cut(s) 7, 69, 169, 290, 293
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 214, 318
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 3 cut(s) 77, 158, 213
TaqI TCGA 3 cut(s) 152, 264, 325
TauI GCSGC 2 cut(s) 71, 293
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 259
TspGWI ACGGA 2 cut(s) 181, 192
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 78, 355
XmiI GTMKAC 2 cut(s) 63, 152
XspI CTAG 1 cut(s) 59
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.