RchiOBHm_Chr3g0467161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016545
Physical Location & Seq
Reverse (-)
13407303 .. 13408012
710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43314

Sequence Viewer

Length: 351 bp
ATGCTCCCCTCTCTCTTCACCTCCACCCTCACGCGCCTCACGCCCCGCCTGCCGGTGCTAATCTTCGCCGCCACGTGGACCGCCTGCCTCACTCTCACGGTGGCTCTGGCCTCCTTCTCTCCCGAGGTTGCGTTTGTCTCGGCCATTTCTTCTTCGTCTTCGTGCGGCTCGGAAGCGTCCATAAGGGTTCTGGCAGACGTGCCGGGAGATATTCTCTGCTTGCCGGCTCAGCTGTTCAGCAAGTCCAGGATCGACTTCATCGTGCCTCCGGTTTTCGCGGCGCTCGTGGTGGCCGGGTCGGCGTGCCTGGTCCGGGCCATGGGCCTGTGGGAGACAGACGAAGCCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.18

Weight (kDa)

4.77

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37530
fragaria_vesca FvH4_6g14180
malus_domestica MD04G1123500.v1.1 MD12G1139400.v1.1
prunus_persica Prupe.6G251200_v2.0.a1
pyrus_communis pycom04g11140
rosa_chinensis RchiOBHm_Chr3g0467161
rosa_laevigata RLG00000024523
rosa_multiflora Rmu_sc0000962.1_g000079 Rmu_sc0018989.1_g000004
rosa_roxburghii Rroxscaffold_6G00413860
rosa_rugosa Rorug03G0085500
rosa_samantha Rh3BG155000
rosa_wichuraiana Rw3G012650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 34, 278
AciI CCGC 5 cut(s) 46, 69, 81, 165, 278
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 141, 291
AcvI CACGTG 1 cut(s) 75
AfiI CCNNNNNNNGG 4 cut(s) 52, 75, 313, 319
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 2 cut(s) 245, 306
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 142, 326
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 5 cut(s) 108, 141, 291, 315, 322
AspLEI GCGC 2 cut(s) 36, 283
AspS9I GGNCC 4 cut(s) 78, 310, 315, 322
AsuC2I CCSGG 3 cut(s) 204, 295, 314
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 78, 310
BauI CACGAG 1 cut(s) 284
BbrPI CACGTG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 247, 308
BcnI CCSGG 3 cut(s) 204, 295, 314
BcoDI GTCTC 2 cut(s) 142, 326
BfoI RGCGCY 1 cut(s) 284
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 3 cut(s) 69, 166, 279
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 3 cut(s) 70, 167, 280
Bme1390I CCNGG 5 cut(s) 204, 247, 295, 308, 314
Bme18I GGWCC 2 cut(s) 78, 310
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 4 cut(s) 78, 310, 315, 322
BmrFI CCNGG 5 cut(s) 204, 247, 295, 308, 314
BmrI ACTGGG 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu1102I GCTNAGC 1 cut(s) 228
BpuMI CCSGG 3 cut(s) 204, 295, 314
BsaAI YACGTR 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 123, 318
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 75, 313, 319
Bse118I RCCGGY 2 cut(s) 52, 223
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 2 cut(s) 247, 308
BseDI CCNNGG 2 cut(s) 123, 318
BseLI CCNNNNNNNGG 4 cut(s) 52, 75, 313, 319
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 346
Bsh1236I CGCG 2 cut(s) 34, 278
BshFI GGCC 5 cut(s) 110, 143, 293, 317, 324
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 6 cut(s) 53, 203, 224, 269, 294, 313
BslI CCNNNNNNNGG 4 cut(s) 52, 75, 313, 319
BsmAI GTCTC 2 cut(s) 142, 326
BsnI GGCC 5 cut(s) 110, 143, 293, 317, 324
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 5 cut(s) 46, 69, 81, 165, 278
BspANI GGCC 5 cut(s) 110, 143, 293, 317, 324
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 34, 278
BspPI GGATC 1 cut(s) 257
BsrFI RCCGGY 2 cut(s) 52, 223
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 2 cut(s) 52, 223
BssECI CCNNGG 2 cut(s) 123, 318
BssMI GATC 1 cut(s) 249
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 2 cut(s) 247, 308
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 5 cut(s) 50, 85, 221, 225, 304
BstDEI CTNAG 1 cut(s) 228
BstDSI CCRYGG 1 cut(s) 318
BstFNI CGCG 2 cut(s) 34, 278
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 2 cut(s) 36, 283
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 142, 326
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 40, 49, 229, 299
BstNI CCWGG 2 cut(s) 247, 308
BstSCI CCNGG 5 cut(s) 202, 245, 293, 306, 312
BstUI CGCG 2 cut(s) 34, 278
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 5 cut(s) 110, 143, 293, 317, 324
BtgI CCRYGG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 199
Cac8I GCNNGC 5 cut(s) 50, 85, 221, 225, 304
CfoI GCGC 2 cut(s) 36, 283
Cfr10I RCCGGY 2 cut(s) 52, 223
Cfr13I GGNCC 4 cut(s) 78, 310, 315, 322
CseI GACGC 1 cut(s) 165
CviAII CATG 1 cut(s) 319
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 2 cut(s) 141, 291
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 78, 310
Eco72I CACGTG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 245, 306
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 322
FaiI YATR 2 cut(s) 182, 320
FatI CATG 1 cut(s) 318
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 3 cut(s) 69, 166, 279
Fsp4HI GCNGC 3 cut(s) 69, 166, 279
GlaI GCGC 2 cut(s) 35, 282
GluI GCNGC 3 cut(s) 69, 166, 279
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 5 cut(s) 110, 143, 293, 317, 324
HapII CCGG 6 cut(s) 53, 203, 224, 269, 294, 313
HgaI GACGC 1 cut(s) 165
HhaI GCGC 2 cut(s) 36, 283
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 2 cut(s) 34, 281
HinP1I GCGC 2 cut(s) 34, 281
HpaII CCGG 6 cut(s) 53, 203, 224, 269, 294, 313
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 74, 198
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 49, 229, 299
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 2 cut(s) 74, 198
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 2 cut(s) 34, 281
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 9
MaeII ACGT 2 cut(s) 74, 198
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 5 cut(s) 7, 55, 141, 144, 150
MnlI CCTC 8 cut(s) 19, 31, 38, 47, 98, 118, 121, 276
MroNI GCCGGC 1 cut(s) 223
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 6 cut(s) 53, 203, 224, 269, 294, 313
MspR9I CCNGG 5 cut(s) 204, 247, 295, 308, 314
MvaI CCWGG 2 cut(s) 247, 308
MvnI CGCG 2 cut(s) 34, 278
MwoI GCNNNNNNNGC 4 cut(s) 40, 49, 229, 299
NaeI GCCGGC 1 cut(s) 225
NciI CCSGG 3 cut(s) 204, 295, 314
NcoI CCATGG 1 cut(s) 318
NdeII GATC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 282
PdiI GCCGGC 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 3 cut(s) 70, 167, 280
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 245, 306
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 2 cut(s) 245, 306
PspPI GGNCC 4 cut(s) 78, 310, 315, 322
PvuII CAGCTG 1 cut(s) 232
SatI GCNGC 3 cut(s) 69, 166, 279
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 4 cut(s) 78, 310, 315, 322
ScrFI CCNGG 5 cut(s) 204, 247, 295, 308, 314
SetI ASST 5 cut(s) 23, 77, 129, 201, 234
SinI GGWCC 2 cut(s) 78, 310
SsiI CCGC 5 cut(s) 46, 69, 81, 165, 278
StyD4I CCNGG 5 cut(s) 202, 245, 293, 306, 312
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 77, 201
TaqI TCGA 1 cut(s) 252
TauI GCSGC 3 cut(s) 71, 168, 281
TspDTI ATGAA 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 78, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.