AT2G37750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016097
Physical Location & Seq
Forward (+)
15830870 .. 15831592
723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37750.1

Sequence Viewer

Length: 249 bp
ATGGAGGGTCTAATTCCGTTAGTATACAAAGCCGTCATGCAAATCCGTTACGGTAACGAGTCGCAGCAACTTTCTTCTTCTTACTACGTTCGTCTTCCCGGTGATTCGGGTCGGTTTGTAAGATCCGATTTAGATGTATCGGGTCCTGGATCTAATTCCTCCAATAGGGCGTCGTCGTCGACAAGCACAACTACGTTTGCTGTTTACGCGGGAGTCCAGTCACCTGTTTCTCGTCAGGTTGTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.8

Weight (kDa)

9.3

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37750 AT5G02090
malus_domestica MD04G1135900.v1.1 MD12G1149400.v1.1
prunus_persica Prupe.6G261000_v2.0.a1
pyrus_communis pycom04g12280
rosa_chinensis RchiOBHm_Chr3g0465351
rosa_laevigata RLG00000024645
rosa_multiflora Rmu_sc0011781.1_g000001
rosa_roxburghii Rroxscaffold_6G00415110
rosa_rugosa Rorug03G0076300
rosa_samantha Rh3BG141200 Rh3CG142200 Rh3DG142300
rosa_wichuraiana Rw3G011550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 24, 179
AccII CGCG 1 cut(s) 209
AciI CCGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 117, 157
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 165
AjnI CCWGG 1 cut(s) 145
AlwI GGATC 2 cut(s) 117, 157
ApeKI GCWGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 113, 213
AvaII GGWCC 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 99
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 99, 147
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 99, 147
BpiI GAAGAC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 165
Bsp143I GATC 2 cut(s) 122, 149
BspACI CCGC 1 cut(s) 209
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 2 cut(s) 117, 157
BsrI ACTGG 1 cut(s) 217
BssMI GATC 2 cut(s) 122, 149
BssNAI GTATAC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 170
Bst1107I GTATAC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 209
BstKTI GATC 2 cut(s) 125, 152
BstMBI GATC 2 cut(s) 122, 149
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 97, 145
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 122, 149
BstYI RGATCY 2 cut(s) 122, 149
BstZ17I GTATAC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 159
CviAII CATG 1 cut(s) 37
CviJI RGCY 1 cut(s) 32
CviKI_1 RGCY 1 cut(s) 32
DpnI GATC 2 cut(s) 124, 151
DpnII GATC 2 cut(s) 122, 149
Eco47I GGWCC 1 cut(s) 143
Eco72I CACGTG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 25, 38
FatI CATG 1 cut(s) 36
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 2 cut(s) 24, 179
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 3 cut(s) 59, 104, 213
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 113, 213
Hpy166II GTNNAC 3 cut(s) 25, 180, 205
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 3 cut(s) 25, 180, 205
Hpy99I CGWCG 3 cut(s) 175, 178, 181
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 3 cut(s) 87, 194, 245
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 3 cut(s) 87, 194, 245
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 122, 149
LpnPI CCDG 6 cut(s) 112, 132, 159, 221, 230, 237
Lsp1109I GCAGC 1 cut(s) 76
MaeII ACGT 3 cut(s) 87, 194, 245
MaeIII GTNAC 4 cut(s) 47, 53, 219, 241
MalI GATC 2 cut(s) 124, 151
MboI GATC 2 cut(s) 122, 149
MboII GAAGA 3 cut(s) 66, 69, 86
MflI RGATCY 2 cut(s) 122, 149
MluCI AATT 2 cut(s) 12, 154
MlyI GAGTC 2 cut(s) 68, 222
MnlI CCTC 1 cut(s) 169
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 99, 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 99
NdeII GATC 2 cut(s) 122, 149
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 219, 241
PfeI GAWTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 1 cut(s) 66
PleI GAGTC 2 cut(s) 67, 221
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
PpsI GAGTC 2 cut(s) 67, 221
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 145
PspCI CACGTG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 143
PspPPI RGGWCCY 1 cut(s) 143
PsuI RGATCY 2 cut(s) 122, 149
SalI GTCGAC 1 cut(s) 178
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 2 cut(s) 122, 149
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 2 cut(s) 68, 222
ScrFI CCNGG 2 cut(s) 99, 147
SetI ASST 5 cut(s) 90, 197, 226, 240, 248
SinI GGWCC 1 cut(s) 143
Sse9I AATT 2 cut(s) 12, 154
SsiI CCGC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 97, 145
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 3 cut(s) 90, 197, 248
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 12, 154
TfiI GAWTC 1 cut(s) 104
TseFI GTSAC 2 cut(s) 219, 241
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 2 cut(s) 219, 241
TspGWI ACGGA 2 cut(s) 6, 35
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 163
XmiI GTMKAC 2 cut(s) 24, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.