RLG00000024645

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016097
Physical Location & Seq
Forward (+)
37806989 .. 37808745
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024645

Sequence Viewer

Length: 357 bp
ATGGAGGGTTTGATTCCATTTGTGTATAGAGCAATAGTGGAATACAAGAACAACAATAGACAAGATGCAGGTGGTGTTTTAAGCTCATCATGGTTCAGCGAGTCGCCTTCTGCTGCCTATATCCGGCTTCCCGGGGATTCGGGCCGGTTCCAGAATTCGGATATTCAGCGTTTTATGTCAGATTATAGTGGGATTAATTCTGCGCCTTCTTCTTCTGCTGCTGCTCAAGTTATGATGTCTTCTGCTGTTCAATCTCCAAAATCAGTGATGAAATTGAGCCTCTGGTTGGAGGTTTCGTCACCGAAGCTCGACTACTCGGAGGTCATGGGTCAAGAGATATTTGATGCAATTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.87

Weight (kDa)

4.76

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37750 AT5G02090
malus_domestica MD04G1135900.v1.1 MD12G1149400.v1.1
prunus_persica Prupe.6G261000_v2.0.a1
pyrus_communis pycom04g12280
rosa_chinensis RchiOBHm_Chr3g0465351
rosa_laevigata RLG00000024645
rosa_multiflora Rmu_sc0011781.1_g000001
rosa_roxburghii Rroxscaffold_6G00415110
rosa_rugosa Rorug03G0076300
rosa_samantha Rh3BG141200 Rh3CG142200 Rh3DG142300
rosa_wichuraiana Rw3G011550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 123, 157, 286
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 2 cut(s) 84, 307
AluI AGCT 2 cut(s) 84, 307
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 113, 218, 221
ApoI RAATTY 1 cut(s) 154
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 132, 133
AsuHPI GGTGA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 100, 205, 208
BcnI CCSGG 2 cut(s) 132, 133
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 3 cut(s) 114, 219, 222
BlsI GCNGC 3 cut(s) 115, 220, 223
Bme1390I CCNGG 2 cut(s) 132, 133
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 132, 133
BmsI GCATC 2 cut(s) 55, 334
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 132, 133
BsaJI CCNNGG 2 cut(s) 131, 132
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 157, 286
Bse118I RCCGGY 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 131, 132
BseLI CCNNNNNNNGG 3 cut(s) 123, 157, 286
BseXI GCAGC 3 cut(s) 100, 205, 208
BshFI GGCC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 124, 132, 145
BslI CCNNNNNNNGG 3 cut(s) 123, 157, 286
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 131
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 131, 132
BstHHI GCGC 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 130, 131
BstV1I GCAGC 3 cut(s) 100, 205, 208
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 142
Cfr9I CCCGGG 1 cut(s) 131
CviAII CATG 2 cut(s) 90, 325
CviJI RGCY 5 cut(s) 84, 127, 144, 279, 307
CviKI_1 RGCY 5 cut(s) 84, 127, 144, 279, 307
Eco88I CYCGRG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 154
FaeI CATG 2 cut(s) 93, 328
FaiI YATR 7 cut(s) 27, 91, 120, 176, 186, 233, 326
FatI CATG 2 cut(s) 89, 324
Fnu4HI GCNGC 3 cut(s) 114, 219, 222
Fsp4HI GCNGC 3 cut(s) 114, 219, 222
GlaI GCGC 1 cut(s) 204
GluI GCNGC 3 cut(s) 114, 219, 222
HaeIII GGCC 1 cut(s) 144
HapII CCGG 3 cut(s) 124, 132, 145
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 93, 328
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 3 cut(s) 13, 101, 137
HpaII CCGG 3 cut(s) 124, 132, 145
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 3 cut(s) 160, 181, 319
Hpy188III TCNNGA 2 cut(s) 151, 332
HpyAV CCTTC 2 cut(s) 117, 216
HpyCH4V TGCA 2 cut(s) 68, 347
Hsp92II CATG 2 cut(s) 93, 328
HspAI GCGC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 54, 137, 145, 158, 164, 268
Lsp1109I GCAGC 3 cut(s) 100, 205, 208
LweI GCATC 2 cut(s) 55, 334
MaeIII GTNAC 1 cut(s) 297
MboII GAAGA 3 cut(s) 201, 204, 231
MfeI CAATTG 1 cut(s) 348
MluCI AATT 4 cut(s) 154, 196, 272, 348
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 3 cut(s) 283, 290, 313
MseI TTAA 2 cut(s) 80, 195
MspI CCGG 3 cut(s) 124, 132, 145
MspR9I CCNGG 2 cut(s) 132, 133
MunI CAATTG 1 cut(s) 348
NciI CCSGG 2 cut(s) 132, 133
NlaIII CATG 2 cut(s) 93, 328
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 13, 137
PkrI GCNGC 3 cut(s) 115, 220, 223
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 80, 195
SatI GCNGC 3 cut(s) 114, 219, 222
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 132, 133
SetI ASST 5 cut(s) 73, 86, 294, 309, 324
SfaNI GCATC 2 cut(s) 55, 334
SmaI CCCGGG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 4 cut(s) 154, 196, 272, 348
StyD4I CCNGG 2 cut(s) 130, 131
TaqI TCGA 1 cut(s) 309
TasI AATT 4 cut(s) 154, 196, 272, 348
TfiI GAWTC 2 cut(s) 13, 137
Tru1I TTAA 2 cut(s) 80, 195
Tru9I TTAA 2 cut(s) 80, 195
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 3 cut(s) 113, 218, 221
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 284
TspMI CCCGGG 1 cut(s) 131
TspRI CASTG 1 cut(s) 270
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.