Rmu_sc0011781.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011781.1
OG0016097
Physical Location & Seq
Reverse (-)
2858 .. 3139
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011781.1_g000001.1.cds

Sequence Viewer

Length: 282 bp
atggagggtttgattccatttgtgtatagagcaatactggaatacaagaacaacaataaacaagatgcaggtggtgttttaagctcatcatggttcagcgagtcgccttctgctgcctatatccggcttcccggggattcgggccggttccagaattcggatattcagcgtttcatgtcagattatagtgggattaattctgcgccttcttcttctgccactgctcaagttatgatgtcttctggtgttcaatctccagttcgtcgtcgagttgctatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

9.3

Isoelectric Point (pI)

80.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37750 AT5G02090
malus_domestica MD04G1135900.v1.1 MD12G1149400.v1.1
prunus_persica Prupe.6G261000_v2.0.a1
pyrus_communis pycom04g12280
rosa_chinensis RchiOBHm_Chr3g0465351
rosa_laevigata RLG00000024645
rosa_multiflora Rmu_sc0011781.1_g000001
rosa_roxburghii Rroxscaffold_6G00415110
rosa_rugosa Rorug03G0076300
rosa_samantha Rh3BG141200 Rh3CG142200 Rh3DG142300
rosa_wichuraiana Rw3G011550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 123, 157
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 154
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 132, 133
AvaI CYCGRG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 100
BcnI CCSGG 2 cut(s) 132, 133
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 132, 133
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 132, 133
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 132, 133
BsaJI CCNNGG 2 cut(s) 131, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 157
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 2 cut(s) 42, 257
BseDI CCNNGG 2 cut(s) 131, 132
BseLI CCNNNNNNNGG 2 cut(s) 123, 157
BseNI ACTGG 2 cut(s) 42, 257
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 124, 132, 145
BslI CCNNNNNNNGG 2 cut(s) 123, 157
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 131
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 2 cut(s) 42, 257
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 131, 132
BstHHI GCGC 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 130, 131
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 142
Cfr9I CCCGGG 1 cut(s) 131
CviAII CATG 2 cut(s) 90, 175
CviJI RGCY 3 cut(s) 84, 127, 144
CviKI_1 RGCY 3 cut(s) 84, 127, 144
Eco88I CYCGRG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 154
FaeI CATG 2 cut(s) 93, 178
FaiI YATR 8 cut(s) 27, 91, 120, 176, 186, 233, 278, 280
FatI CATG 2 cut(s) 89, 174
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 144
HapII CCGG 3 cut(s) 124, 132, 145
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 93, 178
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 3 cut(s) 13, 101, 137
HpaII CCGG 3 cut(s) 124, 132, 145
Hpy188I TCNGA 2 cut(s) 160, 181
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 2 cut(s) 267, 270
HpyAV CCTTC 2 cut(s) 117, 216
HpyCH4V TGCA 1 cut(s) 68
Hsp92II CATG 2 cut(s) 93, 178
HspAI GCGC 1 cut(s) 203
LpnPI CCDG 8 cut(s) 23, 54, 137, 145, 158, 164, 228, 270
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 201, 204, 231
MluCI AATT 2 cut(s) 154, 196
MlyI GAGTC 1 cut(s) 110
MseI TTAA 2 cut(s) 80, 195
MspI CCGG 3 cut(s) 124, 132, 145
MspR9I CCNGG 2 cut(s) 132, 133
NciI CCSGG 2 cut(s) 132, 133
NlaIII CATG 2 cut(s) 93, 178
NlaIV GGNNCC 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 13, 137
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 80, 195
SatI GCNGC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 132, 133
SetI ASST 2 cut(s) 73, 86
SfaNI GCATC 1 cut(s) 55
SmaI CCCGGG 1 cut(s) 133
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 2 cut(s) 154, 196
StyD4I CCNGG 2 cut(s) 130, 131
TaqI TCGA 1 cut(s) 268
TasI AATT 2 cut(s) 154, 196
TfiI GAWTC 2 cut(s) 13, 137
Tru1I TTAA 2 cut(s) 80, 195
Tru9I TTAA 2 cut(s) 80, 195
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 163
TspMI CCCGGG 1 cut(s) 131
TspRI CASTG 1 cut(s) 226
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.