Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012635

Physical Location & Seq

Genomic Coordinates Reverse (-)

5959709 .. 5963522

Gene Structure 3814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTAGGGCTCCAAGCAAGCACGGTCGCGAACAAGCTCTGGACTGGGAGCTTTCACTCAAGGACAAGGATAAAAAAATGAGACCCCAAGAACCCAACAAGGAAATTCCGAAATCAGGAGATTTTGGAACTAGTTCCTACTCGAGGAATTATGATCCAATCAATACTATATCCAGTAGTTTCGGTTCTGAAGATAGTCTTCCAGATGCTGCTTCGGAAAAGGACTTGGGTAATGAGTATTTTAAGCAGAAGAAGTTTAAGGAAGCTATTGACTGCTATTCAAGAAGCATTGCCTTATCTCCAACTGCTGTAGCTTTTGCAAATAGGGCAATGTCATATATCAAAATCAAAAGATTCCAGGAAGCCGAGAATGACTGTACGGAGGCCTTGAATTTGGATGATCGCTATATAAAAGCATACTCACGACGTGCGACAGCTAGAAAAGAACTGGGAAAATTTAAAGAATCTATTGAGGATGCAGAGTTTGCTCTGAGGTTGGAGCCACACAACCAAGAAATCAAGAAACAATATGCTGAGGCCAAATCTTTGTATGAAAAAAGAATTCTTCAGAAAATTTCTGAACAAGAAAAGCAGAAAGTGGGAAAGTTGAATACCAAAGTGAATGGACACAGCATCCAGCCTGTTTCTAGTAGTACTCAAAGGACAGAAATGACTGCAGTTGAGGATCACACTAAGAAAATTAACACAAGTGGGAAGCAAGCGTCGAAGGTATCGGTACAGGAGCTTGCTTCTCGAGCTGCTTTGCGAGCCAAGGTTCTAGCTGCAGAAAACATCACACCACCAACTTCAGCTTATCAATTTGAGGCTTCTTGGAGAGGACTCTCTGGAGATCGTGCTCTTCAGGCTAAATTTTTGAAGGCTATATCTCCCAGTGCACTGCCGCAGATATTCAAAAATGCTTTGACTCTTCACATACTAGTTGATATCATCAAGTGTGTGACAACCTTTTTTATGGACGAAATGGATTTGGCGGTCAACATTTTGGAGAACTTAACGAAGGTTCCTAGATTTGACACACTTGTCATGTTTCTTTCATCCAACGACAAGGCTGATCTTGCTAAGATATGGGATGAAGTGTTCTACAATGAAGCAACCCCCATTGAGTTTGCTGAAAAGCTTGATAACCTGCGTACAAAGTACTGCCTTAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

391

Amino Acids

44.32

Weight (kDa)

9.01

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	65 - 139	7.4e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_1	PF00515	74 - 102	5.4e-08	Tetratricopeptide repeat
RPAP3_C	PF13877	267 - 356	3e-27	Potential Monad-binding region of RPAP3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 FvH4_6g13090
malus_domestica	MD04G1135600.v1.1 MD12G1149300.v1.1
prunus_persica	Prupe.6G260900_v2.0.a1
pyrus_communis	pycom04g12270 pycom12g14310
rosa_chinensis	RchiOBHm_Chr3g0465361
rosa_laevigata	RLG00000024643
rosa_multiflora	Rmu_sc0011781.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415100
rosa_rugosa	Rorug03G0076300
rosa_samantha	Rh3BG141300 Rh3CG142400 Rh3DG142400
rosa_wichuraiana	Rw3G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1040
Acc36I	ACCTGC	1 cut(s)	1155
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	902, 992
AclWI	GGATC	2 cut(s)	149, 693
AcsI	RAATTY	6 cut(s)	105, 391, 455, 561, 573, 869
AcuI	CTGAAG	4 cut(s)	210, 551, 792, 845
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	5 cut(s)	379, 655, 738, 1153, 1160
AfiI	CCNNNNNNNGG	2 cut(s)	116, 144
AflII	CTTAAG	1 cut(s)	1166
AgsI	TTSAA	5 cut(s)	282, 391, 610, 877, 913
AhlI	ACTAGT	2 cut(s)	131, 937
AjiI	CACGTC	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	357
AloI	GAACNNNNNNTCC	2 cut(s)	1082, 1114
Alw21I	GWGCWC	2 cut(s)	859, 898
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	894
AlwI	GGATC	2 cut(s)	149, 693
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	2 cut(s)	142, 753
AoxI	GGCC	2 cut(s)	384, 537
ApaLI	GTGCAC	1 cut(s)	894
ApeKI	GCWGC	3 cut(s)	209, 758, 782
ApoI	RAATTY	6 cut(s)	105, 391, 455, 561, 573, 869
Asp700I	GAANNNNTTC	1 cut(s)	133
AvaI	CYCGRG	2 cut(s)	142, 753
BaeGI	GKGCMC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	859, 898
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	196, 745, 769
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	76
BcuI	ACTAGT	2 cut(s)	131, 937
BfaI	CTAG	7 cut(s)	6, 132, 438, 648, 779, 938, 1026
BfmI	CTRYAG	3 cut(s)	309, 675, 783
BfrI	CTTAAG	1 cut(s)	1166
BfuAI	ACCTGC	1 cut(s)	1155
BisI	GCNGC	4 cut(s)	210, 759, 783, 902
BlsI	GCNGC	4 cut(s)	211, 760, 784, 903
BmcAI	AGTACT	2 cut(s)	655, 1160
Bme1390I	CCNGG	1 cut(s)	359
BmeT110I	CYCGRG	2 cut(s)	142, 753
BmgBI	CACGTC	1 cut(s)	428
BmiI	GGNNCC	3 cut(s)	12, 501, 1023
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	3 cut(s)	55, 458, 885
BmsI	GCATC	3 cut(s)	196, 466, 642
BmuI	ACTGGG	3 cut(s)	55, 458, 885
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	867
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	771
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 144
Bse1I	ACTGG	4 cut(s)	50, 174, 453, 891
Bse3DI	GCAATG	2 cut(s)	288, 336
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	5 cut(s)	403, 481, 633, 1055, 1096
BseLI	CCNNNNNNNGG	2 cut(s)	116, 144
BseMI	GCAATG	2 cut(s)	288, 336
BseMII	CTCAG	2 cut(s)	482, 525
BseNI	ACTGG	4 cut(s)	50, 174, 453, 891
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	3 cut(s)	196, 745, 769
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	386, 539
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	859, 898
BsiHKCI	CYCGRG	2 cut(s)	142, 753
BslI	CCNNNNNNNGG	2 cut(s)	116, 144
BsmAI	GTCTC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	386, 539
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	2 cut(s)	142, 753
Bsp1286I	GDGCHC	3 cut(s)	13, 859, 898
Bsp143I	GATC	5 cut(s)	154, 400, 685, 850, 1072
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	2 cut(s)	902, 992
BspANI	GGCC	2 cut(s)	386, 539
BspCNI	CTCAG	2 cut(s)	483, 526
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	12, 501, 1023
BspMAI	CTGCAG	2 cut(s)	679, 787
BspMI	ACCTGC	1 cut(s)	1155
BspPI	GGATC	2 cut(s)	149, 693
BspQI	GCTCTTC	1 cut(s)	864
BspTI	CTTAAG	1 cut(s)	1166
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	288, 336
BsrI	ACTGG	4 cut(s)	50, 174, 453, 891
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	5 cut(s)	154, 400, 685, 850, 1072
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	26, 377
Bst6I	CTCTTC	2 cut(s)	864, 933
BstAFI	CTTAAG	1 cut(s)	1166
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	20, 720, 747, 768
BstDEI	CTNAG	4 cut(s)	491, 534, 693, 1080
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	5 cut(s)	403, 481, 633, 1055, 1096
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	5 cut(s)	157, 403, 688, 853, 1075
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	5 cut(s)	154, 400, 685, 850, 1072
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	6 cut(s)	326, 485, 755, 767, 863, 1076
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	3 cut(s)	309, 675, 783
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	196, 745, 769
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	386, 539
BtrI	CACGTC	1 cut(s)	428
BtsCI	GGATG	5 cut(s)	403, 481, 633, 1055, 1096
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	2 cut(s)	896, 898
BtuMI	TCGCGA	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	1155
Cac8I	GCNNGC	4 cut(s)	20, 720, 747, 768
CaiI	CAGNNNCTG	1 cut(s)	209
CseI	GACGC	1 cut(s)	711
Csp6I	GTAC	5 cut(s)	378, 654, 737, 1152, 1159
CviAII	CATG	1 cut(s)	1045
CviQI	GTAC	5 cut(s)	378, 654, 737, 1152, 1159
DdeI	CTNAG	4 cut(s)	491, 534, 693, 1080
DpnI	GATC	5 cut(s)	156, 402, 687, 852, 1074
DpnII	GATC	5 cut(s)	154, 400, 685, 850, 1072
DraI	TTTAAA	1 cut(s)	460
DraIII	CACNNNGTG	1 cut(s)	428
DrdI	GACNNNNNNGTC	1 cut(s)	1040
DseDI	GACNNNNNNGTC	1 cut(s)	1040
Eam1104I	CTCTTC	2 cut(s)	864, 933
EarI	CTCTTC	2 cut(s)	864, 933
Eco130I	CCWWGG	1 cut(s)	771
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	946
Eco57I	CTGAAG	4 cut(s)	210, 551, 792, 845
Eco88I	CYCGRG	2 cut(s)	142, 753
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	946
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	1 cut(s)	1048
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	1 cut(s)	1044
Fnu4HI	GCNGC	4 cut(s)	210, 759, 783, 902
FokI	GGATG	5 cut(s)	410, 488, 620, 1042, 1103
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	210, 759, 783, 902
FspBI	CTAG	7 cut(s)	6, 132, 438, 648, 779, 938, 1026
GluI	GCNGC	4 cut(s)	210, 759, 783, 902
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	2 cut(s)	386, 539
HgaI	GACGC	1 cut(s)	711
Hin1II	CATG	1 cut(s)	1048
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HindIII	AAGCTT	1 cut(s)	1136
HinfI	GANTC	4 cut(s)	354, 464, 840, 925
Hpy166II	GTNNAC	2 cut(s)	896, 997
Hpy188I	TCNGA	6 cut(s)	111, 190, 217, 492, 570, 580
Hpy188III	TCNNGA	9 cut(s)	29, 41, 117, 203, 282, 423, 520, 753, 846
Hpy8I	GTNNAC	2 cut(s)	896, 997
Hpy99I	CGWCG	2 cut(s)	429, 727
HpyAV	CCTTC	3 cut(s)	721, 871, 1012
HpyCH4III	ACNGT	2 cut(s)	26, 377
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	5 cut(s)	320, 479, 677, 785, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	326, 485, 755, 767, 863, 1076
HpyF3I	CTNAG	4 cut(s)	491, 534, 693, 1080
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	1 cut(s)	1048
Kzo9I	GATC	5 cut(s)	154, 400, 685, 850, 1072
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	4 cut(s)	16, 49, 499, 742
Lsp1109I	GCAGC	3 cut(s)	196, 745, 769
LweI	GCATC	3 cut(s)	196, 466, 642
MaeI	CTAG	7 cut(s)	6, 132, 438, 648, 779, 938, 1026
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	958
MalI	GATC	5 cut(s)	156, 402, 687, 852, 1074
MboI	GATC	5 cut(s)	154, 400, 685, 850, 1072
MboII	GAAGA	6 cut(s)	191, 203, 262, 557, 851, 920
MhlI	GDGCHC	3 cut(s)	13, 859, 898
MluCI	AATT	9 cut(s)	105, 148, 391, 455, 561, 573, 699, 818, 869
MlyI	GAGTC	2 cut(s)	834, 919
MmeI	TCCRAC	3 cut(s)	326, 477, 1083
MnlI	CCTC	8 cut(s)	138, 376, 466, 486, 529, 676, 817, 830
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	6 cut(s)	243, 258, 459, 702, 1013, 1167
MspCI	CTTAAG	1 cut(s)	1166
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	6 cut(s)	326, 485, 755, 767, 863, 1076
NdeII	GATC	5 cut(s)	154, 400, 685, 850, 1072
NlaIII	CATG	1 cut(s)	1048
NlaIV	GGNNCC	3 cut(s)	12, 501, 1023
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	958
NruI	TCGCGA	1 cut(s)	30
PaeR7I	CTCGAG	2 cut(s)	142, 753
PceI	AGGCCT	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	354, 464
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	211, 760, 784, 903
PleI	GAGTC	2 cut(s)	834, 919
PpsI	GAGTC	2 cut(s)	834, 919
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	12, 501, 1023
PspXI	VCTCGAGB	1 cut(s)	142
PsrI	GAACNNNNNNTAC	2 cut(s)	169, 201
PstI	CTGCAG	2 cut(s)	679, 787
PstNI	CAGNNNCTG	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	30
RsaI	GTAC	5 cut(s)	379, 655, 738, 1153, 1160
RsaNI	GTAC	5 cut(s)	378, 654, 737, 1152, 1159
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	6 cut(s)	243, 258, 459, 702, 1013, 1167
SatI	GCNGC	4 cut(s)	210, 759, 783, 902
Sau3AI	GATC	5 cut(s)	154, 400, 685, 850, 1072
ScaI	AGTACT	2 cut(s)	655, 1160
SchI	GAGTC	2 cut(s)	834, 919
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	3 cut(s)	13, 859, 898
SfaNI	GCATC	3 cut(s)	196, 466, 642
SfcI	CTRYAG	3 cut(s)	309, 675, 783
Sfr274I	CTCGAG	2 cut(s)	142, 753
SlaI	CTCGAG	2 cut(s)	142, 753
SmlI	CTYRAG	4 cut(s)	59, 142, 753, 1166
SmoI	CTYRAG	4 cut(s)	59, 142, 753, 1166
SpeI	ACTAGT	2 cut(s)	131, 937
Sse9I	AATT	9 cut(s)	105, 148, 391, 455, 561, 573, 699, 818, 869
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	902, 992
SspMI	CTAG	7 cut(s)	6, 132, 438, 648, 779, 938, 1026
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	2 cut(s)	26, 377
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	143, 725, 754
TasI	AATT	9 cut(s)	105, 148, 391, 455, 561, 573, 699, 818, 869
TatI	WGTACW	2 cut(s)	653, 1158
TauI	GCSGC	1 cut(s)	904
TfiI	GAWTC	2 cut(s)	354, 464
Tru1I	TTAA	6 cut(s)	243, 258, 459, 702, 1013, 1167
Tru9I	TTAA	6 cut(s)	243, 258, 459, 702, 1013, 1167
TscAI	CASTG	2 cut(s)	898, 903
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	3 cut(s)	209, 758, 782
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	4 cut(s)	567, 1044, 1107, 1122
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	898, 903
Vha464I	CTTAAG	1 cut(s)	1166
VneI	GTGCAC	1 cut(s)	894
XagI	CCTNNNNNAGG	1 cut(s)	142
XapI	RAATTY	6 cut(s)	105, 391, 455, 561, 573, 869
XhoI	CTCGAG	2 cut(s)	142, 753
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	7 cut(s)	6, 132, 438, 648, 779, 938, 1026
ZrmI	AGTACT	2 cut(s)	655, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.