transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 |
| malus_domestica | MD04G1135600.v1.1 MD12G1149300.v1.1 |
| prunus_persica | Prupe.6G260900_v2.0.a1 |
| pyrus_communis | pycom04g12270 pycom12g14310 |
| rosa_chinensis | RchiOBHm_Chr3g0465361 |
| rosa_laevigata | RLG00000024643 |
| rosa_multiflora | Rmu_sc0011781.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00415100 |
| rosa_rugosa | Rorug03G0076300 |
| rosa_samantha | Rh3BG141300 Rh3CG142400 Rh3DG142400 |
| rosa_wichuraiana | Rw3G011560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 1306, 1351, 1618 |
| AccBSI | CCGCTC | 1 cut(s) | 522 |
| AccI | GTMKAC | 2 cut(s) | 242, 1055 |
| AciI | CCGC | 2 cut(s) | 353, 522 |
| AclWI | GGATC | 2 cut(s) | 8, 1167 |
| AcoI | YGGCCR | 1 cut(s) | 1652 |
| AcsI | RAATTY | 1 cut(s) | 908 |
| AcuI | CTGAAG | 1 cut(s) | 30 |
| AfaI | GTAC | 3 cut(s) | 81, 328, 1049 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 701, 1450 |
| AflII | CTTAAG | 1 cut(s) | 320 |
| AflIII | ACRYGT | 3 cut(s) | 716, 970, 1593 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 829 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AjnI | CCWGG | 2 cut(s) | 1106, 1471 |
| Alw21I | GWGCWC | 1 cut(s) | 728 |
| Alw26I | GTCTC | 1 cut(s) | 287 |
| AlwI | GGATC | 2 cut(s) | 8, 1167 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1704 |
| Ama87I | CYCGRG | 1 cut(s) | 727 |
| AoxI | GGCC | 2 cut(s) | 1216, 1652 |
| ApeKI | GCWGC | 2 cut(s) | 1206, 1389 |
| ApoI | RAATTY | 1 cut(s) | 908 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1422, 1454 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 462, 608, 937 |
| AspS9I | GGNCC | 2 cut(s) | 691, 1180 |
| AsuHPI | GGTGA | 2 cut(s) | 613, 992 |
| AsuII | TTCGAA | 2 cut(s) | 564, 1416 |
| AvaI | CYCGRG | 1 cut(s) | 727 |
| AvaII | GGWCC | 2 cut(s) | 691, 1180 |
| BaeGI | GKGCMC | 2 cut(s) | 925, 1603 |
| BalI | TGGCCA | 1 cut(s) | 1654 |
| BanI | GGYRCC | 3 cut(s) | 1306, 1351, 1618 |
| BanII | GRGCYC | 1 cut(s) | 728 |
| BauI | CACGAG | 2 cut(s) | 1324, 1369 |
| BbsI | GAAGAC | 1 cut(s) | 573 |
| Bbv12I | GWGCWC | 1 cut(s) | 728 |
| BbvCI | CCTCAGC | 1 cut(s) | 276 |
| BbvI | GCAGC | 2 cut(s) | 1218, 1376 |
| BccI | CCATC | 4 cut(s) | 169, 415, 703, 772 |
| BceAI | ACGGC | 1 cut(s) | 1231 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1396, 1430 |
| BciT130I | CCWGG | 2 cut(s) | 1108, 1473 |
| BcoDI | GTCTC | 1 cut(s) | 287 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 6 cut(s) | 290, 447, 452, 467, 588, 837 |
| BfrI | CTTAAG | 1 cut(s) | 320 |
| BglII | AGATCT | 2 cut(s) | 742, 1459 |
| BisI | GCNGC | 2 cut(s) | 1207, 1390 |
| BlsI | GCNGC | 2 cut(s) | 1208, 1391 |
| Bme1390I | CCNGG | 2 cut(s) | 1108, 1473 |
| Bme18I | GGWCC | 2 cut(s) | 691, 1180 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 829 |
| BmeT110I | CYCGRG | 1 cut(s) | 727 |
| BmgT120I | GGNCC | 2 cut(s) | 691, 1180 |
| BmiI | GGNNCC | 7 cut(s) | 692, 693, 953, 1181, 1308, 1353, 1620 |
| BmrFI | CCNGG | 2 cut(s) | 1108, 1473 |
| BmrI | ACTGGG | 1 cut(s) | 920 |
| BmsI | GCATC | 5 cut(s) | 271, 778, 1329, 1482, 1672 |
| BmuI | ACTGGG | 1 cut(s) | 920 |
| BpiI | GAAGAC | 1 cut(s) | 573 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 785, 817 |
| BpmI | CTGGAG | 1 cut(s) | 1418 |
| Bpu10I | CCTNAGC | 1 cut(s) | 276 |
| Bpu14I | TTCGAA | 2 cut(s) | 564, 1416 |
| BpuEI | CTTGAG | 1 cut(s) | 1570 |
| BsaI | GGTCTC | 1 cut(s) | 287 |
| BsaJI | CCNNGG | 3 cut(s) | 819, 1471, 1622 |
| BsaWI | WCCGGW | 1 cut(s) | 296 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 715, 745, 1031, 1061 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 701, 1450 |
| Bse1I | ACTGG | 1 cut(s) | 926 |
| BseBI | CCWGG | 2 cut(s) | 1108, 1473 |
| BseDI | CCNNGG | 3 cut(s) | 819, 1471, 1622 |
| BseGI | GGATG | 2 cut(s) | 286, 1648 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 701, 1450 |
| BseMII | CTCAG | 4 cut(s) | 267, 400, 783, 1274 |
| BseNI | ACTGG | 1 cut(s) | 926 |
| BseSI | GKGCMC | 2 cut(s) | 925, 1603 |
| BseXI | GCAGC | 2 cut(s) | 1218, 1376 |
| BseYI | CCCAGC | 1 cut(s) | 412 |
| BsgI | GTGCAG | 1 cut(s) | 1225 |
| BshFI | GGCC | 2 cut(s) | 1218, 1654 |
| BshNI | GGYRCC | 3 cut(s) | 1306, 1351, 1618 |
| BsiHKAI | GWGCWC | 1 cut(s) | 728 |
| BsiHKCI | CYCGRG | 1 cut(s) | 727 |
| BsiSI | CCGG | 2 cut(s) | 17, 297 |
| BslFI | GGGAC | 4 cut(s) | 704, 1172, 1193, 1414 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 701, 1450 |
| BsmAI | GTCTC | 1 cut(s) | 287 |
| BsmFI | GGGAC | 4 cut(s) | 704, 1172, 1193, 1414 |
| BsnI | GGCC | 2 cut(s) | 1218, 1654 |
| Bso31I | GGTCTC | 1 cut(s) | 287 |
| BsoBI | CYCGRG | 1 cut(s) | 727 |
| Bsp119I | TTCGAA | 2 cut(s) | 564, 1416 |
| Bsp1286I | GDGCHC | 3 cut(s) | 728, 925, 1603 |
| Bsp143I | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| BspACI | CCGC | 2 cut(s) | 353, 522 |
| BspANI | GGCC | 2 cut(s) | 1218, 1654 |
| BspCNI | CTCAG | 4 cut(s) | 268, 399, 784, 1275 |
| BspLI | GGNNCC | 7 cut(s) | 692, 693, 953, 1181, 1308, 1353, 1620 |
| BspPI | GGATC | 2 cut(s) | 8, 1167 |
| BspQI | GCTCTTC | 1 cut(s) | 1023 |
| BspT104I | TTCGAA | 2 cut(s) | 564, 1416 |
| BspT107I | GGYRCC | 3 cut(s) | 1306, 1351, 1618 |
| BspTI | CTTAAG | 1 cut(s) | 320 |
| BspTNI | GGTCTC | 1 cut(s) | 287 |
| BsrBI | CCGCTC | 1 cut(s) | 522 |
| BsrI | ACTGG | 1 cut(s) | 926 |
| BssECI | CCNNGG | 3 cut(s) | 819, 1471, 1622 |
| BssMI | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| BssSI | CACGAG | 2 cut(s) | 1324, 1369 |
| BssT1I | CCWWGG | 2 cut(s) | 819, 1622 |
| Bst2BI | CACGAG | 2 cut(s) | 1324, 1369 |
| Bst2UI | CCWGG | 2 cut(s) | 1108, 1473 |
| Bst4CI | ACNGT | 5 cut(s) | 79, 175, 368, 601, 1234 |
| Bst6I | CTCTTC | 1 cut(s) | 1023 |
| BstAFI | CTTAAG | 1 cut(s) | 320 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 26, 259, 1669 |
| BstBI | TTCGAA | 2 cut(s) | 564, 1416 |
| BstC8I | GCNNGC | 2 cut(s) | 410, 1350 |
| BstDEI | CTNAG | 7 cut(s) | 276, 386, 792, 1130, 1200, 1283, 1519 |
| BstF5I | GGATG | 2 cut(s) | 286, 1648 |
| BstKTI | GATC | 7 cut(s) | 16, 116, 745, 845, 1162, 1462, 1704 |
| BstMAI | GTCTC | 1 cut(s) | 287 |
| BstMBI | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 26, 259, 281, 815, 1011, 1215, 1660, 1669 |
| BstNI | CCWGG | 2 cut(s) | 1108, 1473 |
| BstNSI | RCATGY | 5 cut(s) | 720, 974, 1246, 1483, 1597 |
| BstSCI | CCNGG | 2 cut(s) | 1106, 1471 |
| BstSLI | GKGCMC | 2 cut(s) | 925, 1603 |
| BstV1I | GCAGC | 2 cut(s) | 1218, 1376 |
| BstV2I | GAAGAC | 1 cut(s) | 573 |
| BstX2I | RGATCY | 4 cut(s) | 13, 742, 1459, 1701 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 412 |
| BstYI | RGATCY | 4 cut(s) | 13, 742, 1459, 1701 |
| BsuRI | GGCC | 2 cut(s) | 1218, 1654 |
| BtsCI | GGATG | 2 cut(s) | 286, 1648 |
| BtsI | GCAGTG | 2 cut(s) | 27, 1092 |
| BtsIMutI | CAGTG | 3 cut(s) | 27, 364, 1092 |
| Cac8I | GCNNGC | 2 cut(s) | 410, 1350 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1704 |
| Cfr13I | GGNCC | 2 cut(s) | 691, 1180 |
| Csp6I | GTAC | 3 cut(s) | 80, 327, 1048 |
| CviQI | GTAC | 3 cut(s) | 80, 327, 1048 |
| DdeI | CTNAG | 7 cut(s) | 276, 386, 792, 1130, 1200, 1283, 1519 |
| DpnI | GATC | 7 cut(s) | 15, 115, 744, 844, 1161, 1461, 1703 |
| DpnII | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| DriI | GACNNNNNGTC | 1 cut(s) | 829 |
| EaeI | YGGCCR | 1 cut(s) | 1652 |
| Eam1104I | CTCTTC | 1 cut(s) | 1023 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 829 |
| EarI | CTCTTC | 1 cut(s) | 1023 |
| EciI | GGCGGA | 1 cut(s) | 342 |
| Ecl136II | GAGCTC | 1 cut(s) | 726 |
| Eco130I | CCWWGG | 2 cut(s) | 819, 1622 |
| Eco24I | GRGCYC | 1 cut(s) | 728 |
| Eco31I | GGTCTC | 1 cut(s) | 287 |
| Eco47I | GGWCC | 2 cut(s) | 691, 1180 |
| Eco53kI | GAGCTC | 1 cut(s) | 726 |
| Eco57I | CTGAAG | 1 cut(s) | 30 |
| Eco88I | CYCGRG | 1 cut(s) | 727 |
| EcoICRI | GAGCTC | 1 cut(s) | 726 |
| EcoO109I | RGGNCCY | 2 cut(s) | 691, 1180 |
| EcoRII | CCWGG | 2 cut(s) | 1106, 1471 |
| EcoT14I | CCWWGG | 2 cut(s) | 819, 1622 |
| EcoT38I | GRGCYC | 1 cut(s) | 728 |
| ErhI | CCWWGG | 2 cut(s) | 819, 1622 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1396, 1428 |
| FaqI | GGGAC | 4 cut(s) | 704, 1172, 1193, 1414 |
| FblI | GTMKAC | 2 cut(s) | 242, 1055 |
| Fnu4HI | GCNGC | 2 cut(s) | 1207, 1390 |
| FokI | GGATG | 2 cut(s) | 293, 1655 |
| FriOI | GRGCYC | 1 cut(s) | 728 |
| Fsp4HI | GCNGC | 2 cut(s) | 1207, 1390 |
| FspBI | CTAG | 6 cut(s) | 290, 447, 452, 467, 588, 837 |
| GluI | GCNGC | 2 cut(s) | 1207, 1390 |
| GsaI | CCCAGC | 1 cut(s) | 416 |
| GsuI | CTGGAG | 1 cut(s) | 1418 |
| HaeIII | GGCC | 2 cut(s) | 1218, 1654 |
| HapII | CCGG | 2 cut(s) | 17, 297 |
| HincII | GTYRAC | 2 cut(s) | 243, 1024 |
| HindII | GTYRAC | 2 cut(s) | 243, 1024 |
| HindIII | AAGCTT | 1 cut(s) | 807 |
| HinfI | GANTC | 9 cut(s) | 45, 178, 374, 512, 857, 938, 1153, 1331, 1431 |
| HpaII | CCGG | 2 cut(s) | 17, 297 |
| HphI | GGTGA | 2 cut(s) | 613, 992 |
| Hpy166II | GTNNAC | 6 cut(s) | 243, 383, 635, 1024, 1056, 1430 |
| Hpy188I | TCNGA | 6 cut(s) | 202, 221, 432, 847, 1541, 1706 |
| Hpy188III | TCNNGA | 8 cut(s) | 290, 452, 623, 802, 1157, 1435, 1463, 1561 |
| Hpy8I | GTNNAC | 6 cut(s) | 243, 383, 635, 1024, 1056, 1430 |
| HpyAV | CCTTC | 4 cut(s) | 256, 821, 1030, 1558 |
| HpyCH4III | ACNGT | 5 cut(s) | 79, 175, 368, 601, 1234 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 26, 259, 281, 815, 1011, 1215, 1660, 1669 |
| HpyF3I | CTNAG | 7 cut(s) | 276, 386, 792, 1130, 1200, 1283, 1519 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| KflI | GGGWCCC | 1 cut(s) | 691 |
| Kzo9I | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| LguI | GCTCTTC | 1 cut(s) | 1023 |
| LmnI | GCTCC | 1 cut(s) | 723 |
| Lsp1109I | GCAGC | 2 cut(s) | 1218, 1376 |
| LweI | GCATC | 5 cut(s) | 271, 778, 1329, 1482, 1672 |
| MaeI | CTAG | 6 cut(s) | 290, 447, 452, 467, 588, 837 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 2 cut(s) | 123, 590 |
| MalI | GATC | 7 cut(s) | 15, 115, 744, 844, 1161, 1461, 1703 |
| MbiI | CCGCTC | 1 cut(s) | 522 |
| MboI | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| MboII | GAAGA | 7 cut(s) | 23, 215, 470, 578, 1040, 1469, 1658 |
| MfeI | CAATTG | 1 cut(s) | 263 |
| MflI | RGATCY | 4 cut(s) | 13, 742, 1459, 1701 |
| MhlI | GDGCHC | 3 cut(s) | 728, 925, 1603 |
| MlsI | TGGCCA | 1 cut(s) | 1654 |
| MluCI | AATT | 9 cut(s) | 254, 263, 479, 529, 607, 628, 881, 902, 908 |
| MluNI | TGGCCA | 1 cut(s) | 1654 |
| MlyI | GAGTC | 1 cut(s) | 1425 |
| MmeI | TCCRAC | 4 cut(s) | 523, 910, 1402, 1564 |
| Mox20I | TGGCCA | 1 cut(s) | 1654 |
| MroXI | GAANNNNTTC | 3 cut(s) | 462, 608, 937 |
| MscI | TGGCCA | 1 cut(s) | 1654 |
| MseI | TTAA | 7 cut(s) | 92, 140, 192, 321, 573, 1236, 1253 |
| Msp20I | TGGCCA | 1 cut(s) | 1654 |
| MspCI | CTTAAG | 1 cut(s) | 320 |
| MspI | CCGG | 2 cut(s) | 17, 297 |
| MspR9I | CCNGG | 2 cut(s) | 1108, 1473 |
| MunI | CAATTG | 1 cut(s) | 263 |
| MvaI | CCWGG | 2 cut(s) | 1108, 1473 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 26, 259, 281, 815, 1011, 1215, 1660, 1669 |
| NdeII | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| NlaIV | GGNNCC | 7 cut(s) | 692, 693, 953, 1181, 1308, 1353, 1620 |
| NmuCI | GTSAC | 1 cut(s) | 123 |
| NspI | RCATGY | 5 cut(s) | 720, 974, 1246, 1483, 1597 |
| NspV | TTCGAA | 2 cut(s) | 564, 1416 |
| PaeR7I | CTCGAG | 1 cut(s) | 727 |
| PciI | ACATGT | 3 cut(s) | 716, 970, 1593 |
| PciSI | GCTCTTC | 1 cut(s) | 1023 |
| PdmI | GAANNNNTTC | 3 cut(s) | 462, 608, 937 |
| PfeI | GAWTC | 8 cut(s) | 45, 178, 374, 512, 857, 938, 1153, 1331 |
| PflFI | GACNNNGTC | 1 cut(s) | 1184 |
| PkrI | GCNGC | 2 cut(s) | 1208, 1391 |
| PleI | GAGTC | 1 cut(s) | 1425 |
| PpsI | GAGTC | 1 cut(s) | 1425 |
| PpuMI | RGGWCCY | 2 cut(s) | 691, 1180 |
| PscI | ACATGT | 3 cut(s) | 716, 970, 1593 |
| Psp124BI | GAGCTC | 1 cut(s) | 728 |
| Psp5II | RGGWCCY | 2 cut(s) | 691, 1180 |
| Psp6I | CCWGG | 2 cut(s) | 1106, 1471 |
| PspFI | CCCAGC | 1 cut(s) | 412 |
| PspGI | CCWGG | 2 cut(s) | 1106, 1471 |
| PspN4I | GGNNCC | 7 cut(s) | 692, 693, 953, 1181, 1308, 1353, 1620 |
| PspPI | GGNCC | 2 cut(s) | 691, 1180 |
| PspPPI | RGGWCCY | 2 cut(s) | 691, 1180 |
| PspXI | VCTCGAGB | 1 cut(s) | 727 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1704 |
| PsuI | RGATCY | 4 cut(s) | 13, 742, 1459, 1701 |
| PsyI | GACNNNGTC | 1 cut(s) | 1184 |
| RsaI | GTAC | 3 cut(s) | 81, 328, 1049 |
| RsaNI | GTAC | 3 cut(s) | 80, 327, 1048 |
| SacI | GAGCTC | 1 cut(s) | 728 |
| SalI | GTCGAC | 1 cut(s) | 241 |
| SapI | GCTCTTC | 1 cut(s) | 1023 |
| SaqAI | TTAA | 7 cut(s) | 92, 140, 192, 321, 573, 1236, 1253 |
| SatI | GCNGC | 2 cut(s) | 1207, 1390 |
| Sau3AI | GATC | 7 cut(s) | 13, 113, 742, 842, 1159, 1459, 1701 |
| Sau96I | GGNCC | 2 cut(s) | 691, 1180 |
| SchI | GAGTC | 1 cut(s) | 1425 |
| ScrFI | CCNGG | 2 cut(s) | 1108, 1473 |
| SduI | GDGCHC | 3 cut(s) | 728, 925, 1603 |
| SfaNI | GCATC | 5 cut(s) | 271, 778, 1329, 1482, 1672 |
| Sfr274I | CTCGAG | 1 cut(s) | 727 |
| SfuI | TTCGAA | 2 cut(s) | 564, 1416 |
| SinI | GGWCC | 2 cut(s) | 691, 1180 |
| SlaI | CTCGAG | 1 cut(s) | 727 |
| SmlI | CTYRAG | 3 cut(s) | 320, 727, 1585 |
| SmoI | CTYRAG | 3 cut(s) | 320, 727, 1585 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| Sse9I | AATT | 9 cut(s) | 254, 263, 479, 529, 607, 628, 881, 902, 908 |
| SsiI | CCGC | 2 cut(s) | 353, 522 |
| SspI | AATATT | 1 cut(s) | 853 |
| SspMI | CTAG | 6 cut(s) | 290, 447, 452, 467, 588, 837 |
| SstI | GAGCTC | 1 cut(s) | 728 |
| StyD4I | CCNGG | 2 cut(s) | 1106, 1471 |
| StyI | CCWWGG | 2 cut(s) | 819, 1622 |
| TaaI | ACNGT | 5 cut(s) | 79, 175, 368, 601, 1234 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqI | TCGA | 7 cut(s) | 112, 242, 564, 728, 803, 1416, 1614 |
| TaqII | GACCGA | 1 cut(s) | 1242 |
| TasI | AATT | 9 cut(s) | 254, 263, 479, 529, 607, 628, 881, 902, 908 |
| TatI | WGTACW | 1 cut(s) | 326 |
| TfiI | GAWTC | 8 cut(s) | 45, 178, 374, 512, 857, 938, 1153, 1331 |
| Tru1I | TTAA | 7 cut(s) | 92, 140, 192, 321, 573, 1236, 1253 |
| Tru9I | TTAA | 7 cut(s) | 92, 140, 192, 321, 573, 1236, 1253 |
| TscAI | CASTG | 3 cut(s) | 27, 371, 1099 |
| TseFI | GTSAC | 1 cut(s) | 123 |
| TseI | GCWGC | 2 cut(s) | 1206, 1389 |
| Tsp45I | GTSAC | 1 cut(s) | 123 |
| TspDTI | ATGAA | 3 cut(s) | 693, 1181, 1518 |
| TspGWI | ACGGA | 1 cut(s) | 1524 |
| TspRI | CASTG | 3 cut(s) | 27, 371, 1099 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1184 |
| Vha464I | CTTAAG | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 2 cut(s) | 691, 1180 |
| XapI | RAATTY | 1 cut(s) | 908 |
| XbaI | TCTAGA | 2 cut(s) | 289, 451 |
| XceI | RCATGY | 5 cut(s) | 720, 974, 1246, 1483, 1597 |
| XhoI | CTCGAG | 1 cut(s) | 727 |
| XmiI | GTMKAC | 2 cut(s) | 242, 1055 |
| XmnI | GAANNNNTTC | 3 cut(s) | 462, 608, 937 |
| XspI | CTAG | 6 cut(s) | 290, 447, 452, 467, 588, 837 |