transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 FvH4_6g13090 |
| malus_domestica | MD04G1135600.v1.1 MD12G1149300.v1.1 |
| prunus_persica | Prupe.6G260900_v2.0.a1 |
| pyrus_communis | pycom04g12270 pycom12g14310 |
| rosa_chinensis | RchiOBHm_Chr3g0465361 |
| rosa_laevigata | RLG00000024643 |
| rosa_multiflora | Rmu_sc0011781.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00415100 |
| rosa_rugosa | Rorug03G0076300 |
| rosa_samantha | Rh3BG141300 Rh3CG142400 Rh3DG142400 |
| rosa_wichuraiana | Rw3G011560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 921 |
| Acc16I | TGCGCA | 1 cut(s) | 365 |
| Acc36I | ACCTGC | 1 cut(s) | 749 |
| AccB1I | GGYRCC | 3 cut(s) | 1523, 1631, 1747 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 728 |
| AccBSI | CCGCTC | 1 cut(s) | 1980 |
| AccI | GTMKAC | 2 cut(s) | 680, 824 |
| AciI | CCGC | 4 cut(s) | 915, 969, 1347, 1978 |
| AclWI | GGATC | 5 cut(s) | 162, 244, 713, 731, 1602 |
| AcoI | YGGCCR | 1 cut(s) | 1242 |
| AcsI | RAATTY | 3 cut(s) | 998, 1043, 1334 |
| AcuI | CTGAAG | 2 cut(s) | 404, 1221 |
| AfaI | GTAC | 2 cut(s) | 122, 1291 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 343, 728 |
| AflIII | ACRYGT | 2 cut(s) | 1142, 1989 |
| AhlI | ACTAGT | 1 cut(s) | 1055 |
| AjnI | CCWGG | 2 cut(s) | 1546, 1867 |
| AleI | CACNNNNGTG | 2 cut(s) | 836, 1023 |
| Alw21I | GWGCWC | 1 cut(s) | 351 |
| Alw26I | GTCTC | 2 cut(s) | 1087, 1766 |
| AlwI | GGATC | 5 cut(s) | 162, 244, 713, 731, 1602 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 269 |
| AoxI | GGCC | 5 cut(s) | 1242, 1348, 1539, 1651, 2048 |
| ApeKI | GCWGC | 5 cut(s) | 42, 980, 1149, 1179, 1641 |
| ApoI | RAATTY | 3 cut(s) | 998, 1043, 1334 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2080 |
| AspLEI | GCGC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 3 cut(s) | 1349, 1539, 1660 |
| AsuHPI | GGTGA | 3 cut(s) | 119, 194, 326 |
| AvaII | GGWCC | 1 cut(s) | 1660 |
| BaeGI | GKGCMC | 1 cut(s) | 1999 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 357, 390 |
| BalI | TGGCCA | 1 cut(s) | 1244 |
| BanI | GGYRCC | 3 cut(s) | 1523, 1631, 1747 |
| BanII | GRGCYC | 1 cut(s) | 1911 |
| Bbv12I | GWGCWC | 1 cut(s) | 351 |
| BbvI | GCAGC | 5 cut(s) | 54, 992, 1161, 1191, 1653 |
| BccI | CCATC | 9 cut(s) | 93, 110, 350, 748, 1133, 1268, 1348, 1643, 1963 |
| BciT130I | CCWGG | 2 cut(s) | 1548, 1869 |
| BciVI | GTATCC | 1 cut(s) | 258 |
| BcoDI | GTCTC | 2 cut(s) | 1087, 1766 |
| BcuI | ACTAGT | 1 cut(s) | 1055 |
| BfaI | CTAG | 4 cut(s) | 260, 834, 1056, 1263 |
| BfmI | CTRYAG | 2 cut(s) | 40, 240 |
| BfuAI | ACCTGC | 1 cut(s) | 749 |
| BfuI | GTATCC | 1 cut(s) | 258 |
| BglII | AGATCT | 4 cut(s) | 451, 1168, 1855, 2097 |
| BisI | GCNGC | 6 cut(s) | 43, 981, 1150, 1180, 1348, 1642 |
| BlsI | GCNGC | 6 cut(s) | 44, 982, 1151, 1181, 1349, 1643 |
| Bme1390I | CCNGG | 2 cut(s) | 1548, 1869 |
| Bme18I | GGWCC | 1 cut(s) | 1660 |
| BmgT120I | GGNCC | 3 cut(s) | 1349, 1539, 1660 |
| BmiI | GGNNCC | 7 cut(s) | 1379, 1525, 1633, 1749, 1786, 2016, 2083 |
| BmrFI | CCNGG | 2 cut(s) | 1548, 1869 |
| BmsI | GCATC | 2 cut(s) | 1204, 1878 |
| BpmI | CTGGAG | 2 cut(s) | 819, 1814 |
| BsaBI | GATNNNNATC | 1 cut(s) | 450 |
| BsaI | GGTCTC | 1 cut(s) | 1766 |
| BsaJI | CCNNGG | 3 cut(s) | 1193, 1867, 1868 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 104, 134 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 343, 728 |
| Bse1I | ACTGG | 1 cut(s) | 802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 450 |
| BseBI | CCWGG | 2 cut(s) | 1548, 1869 |
| BseDI | CCNNGG | 3 cut(s) | 1193, 1867, 1868 |
| BseGI | GGATG | 3 cut(s) | 121, 1214, 2044 |
| BseJI | GATNNNNATC | 1 cut(s) | 450 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 343, 728 |
| BseMII | CTCAG | 4 cut(s) | 8, 920, 1209, 1508 |
| BseNI | ACTGG | 1 cut(s) | 802 |
| BseRI | GAGGAG | 2 cut(s) | 341, 1777 |
| BseSI | GKGCMC | 1 cut(s) | 1999 |
| BseXI | GCAGC | 5 cut(s) | 54, 992, 1161, 1191, 1653 |
| BseYI | CCCAGC | 2 cut(s) | 108, 342 |
| BsgI | GTGCAG | 3 cut(s) | 999, 1181, 1660 |
| BshFI | GGCC | 5 cut(s) | 1244, 1350, 1541, 1653, 2050 |
| BshNI | GGYRCC | 3 cut(s) | 1523, 1631, 1747 |
| BsiHKAI | GWGCWC | 1 cut(s) | 351 |
| BsiSI | CCGG | 2 cut(s) | 782, 1521 |
| BslFI | GGGAC | 3 cut(s) | 19, 1607, 1824 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 343, 728 |
| BsmAI | GTCTC | 2 cut(s) | 1087, 1766 |
| BsmFI | GGGAC | 3 cut(s) | 19, 1607, 1824 |
| BsmI | GAATGC | 1 cut(s) | 540 |
| BsnI | GGCC | 5 cut(s) | 1244, 1350, 1541, 1653, 2050 |
| Bso31I | GGTCTC | 1 cut(s) | 1766 |
| Bsp1286I | GDGCHC | 3 cut(s) | 351, 1911, 1999 |
| Bsp1407I | TGTACA | 1 cut(s) | 1289 |
| Bsp19I | CCATGG | 1 cut(s) | 1193 |
| BspACI | CCGC | 4 cut(s) | 915, 969, 1347, 1978 |
| BspANI | GGCC | 5 cut(s) | 1244, 1350, 1541, 1653, 2050 |
| BspCNI | CTCAG | 4 cut(s) | 9, 919, 1210, 1507 |
| BspLI | GGNNCC | 7 cut(s) | 1379, 1525, 1633, 1749, 1786, 2016, 2083 |
| BspMAI | CTGCAG | 2 cut(s) | 44, 244 |
| BspMI | ACCTGC | 1 cut(s) | 749 |
| BspPI | GGATC | 5 cut(s) | 162, 244, 713, 731, 1602 |
| BspT107I | GGYRCC | 3 cut(s) | 1523, 1631, 1747 |
| BspTNI | GGTCTC | 1 cut(s) | 1766 |
| BsrBI | CCGCTC | 1 cut(s) | 1980 |
| BsrGI | TGTACA | 1 cut(s) | 1289 |
| BsrI | ACTGG | 1 cut(s) | 802 |
| BssECI | CCNNGG | 3 cut(s) | 1193, 1867, 1868 |
| BssT1I | CCWWGG | 1 cut(s) | 1193 |
| Bst2UI | CCWGG | 2 cut(s) | 1548, 1869 |
| Bst6I | CTCTTC | 3 cut(s) | 1335, 2058, 2071 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 464 |
| BstAUI | TGTACA | 1 cut(s) | 1289 |
| BstC8I | GCNNGC | 1 cut(s) | 1398 |
| BstDEI | CTNAG | 6 cut(s) | 17, 388, 906, 1218, 1494, 1565 |
| BstDSI | CCRYGG | 1 cut(s) | 1193 |
| BstF5I | GGATG | 3 cut(s) | 121, 1214, 2044 |
| BstHHI | GCGC | 1 cut(s) | 366 |
| BstMAI | GTCTC | 2 cut(s) | 1087, 1766 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 464, 977, 1241, 1397, 1538, 1650 |
| BstNI | CCWGG | 2 cut(s) | 1548, 1869 |
| BstNSI | RCATGY | 1 cut(s) | 1146 |
| BstSCI | CCNGG | 2 cut(s) | 1546, 1867 |
| BstSFI | CTRYAG | 2 cut(s) | 40, 240 |
| BstSLI | GKGCMC | 1 cut(s) | 1999 |
| BstV1I | GCAGC | 5 cut(s) | 54, 992, 1161, 1191, 1653 |
| BstX2I | RGATCY | 7 cut(s) | 236, 451, 718, 736, 1168, 1855, 2097 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 411, 558, 1374, 1849 |
| BstYI | RGATCY | 7 cut(s) | 236, 451, 718, 736, 1168, 1855, 2097 |
| BsuI | GTATCC | 1 cut(s) | 258 |
| BsuRI | GGCC | 5 cut(s) | 1244, 1350, 1541, 1653, 2050 |
| BtgI | CCRYGG | 1 cut(s) | 1193 |
| BtsCI | GGATG | 3 cut(s) | 121, 1214, 2044 |
| BtsI | GCAGTG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 7 cut(s) | 270, 620, 795, 1030, 1245, 1440, 1959 |
| BveI | ACCTGC | 1 cut(s) | 749 |
| Cac8I | GCNNGC | 1 cut(s) | 1398 |
| CaiI | CAGNNNCTG | 1 cut(s) | 269 |
| CfoI | GCGC | 1 cut(s) | 366 |
| Cfr13I | GGNCC | 3 cut(s) | 1349, 1539, 1660 |
| Csp6I | GTAC | 2 cut(s) | 121, 1290 |
| CviAII | CATG | 8 cut(s) | 227, 505, 1143, 1194, 1287, 1432, 1678, 1696 |
| CviQI | GTAC | 2 cut(s) | 121, 1290 |
| DdeI | CTNAG | 6 cut(s) | 17, 388, 906, 1218, 1494, 1565 |
| EaeI | YGGCCR | 1 cut(s) | 1242 |
| Eam1104I | CTCTTC | 3 cut(s) | 1335, 2058, 2071 |
| EarI | CTCTTC | 3 cut(s) | 1335, 2058, 2071 |
| Eco130I | CCWWGG | 1 cut(s) | 1193 |
| Eco24I | GRGCYC | 1 cut(s) | 1911 |
| Eco31I | GGTCTC | 1 cut(s) | 1766 |
| Eco32I | GATATC | 1 cut(s) | 198 |
| Eco47I | GGWCC | 1 cut(s) | 1660 |
| Eco57I | CTGAAG | 2 cut(s) | 404, 1221 |
| EcoRII | CCWGG | 2 cut(s) | 1546, 1867 |
| EcoRV | GATATC | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 1 cut(s) | 1193 |
| EcoT38I | GRGCYC | 1 cut(s) | 1911 |
| ErhI | CCWWGG | 1 cut(s) | 1193 |
| FaeI | CATG | 8 cut(s) | 230, 508, 1146, 1197, 1290, 1435, 1681, 1699 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1792, 1824 |
| FaqI | GGGAC | 3 cut(s) | 19, 1607, 1824 |
| FatI | CATG | 8 cut(s) | 226, 504, 1142, 1193, 1286, 1431, 1677, 1695 |
| FauI | CCCGC | 1 cut(s) | 1985 |
| FauNDI | CATATG | 1 cut(s) | 592 |
| FblI | GTMKAC | 2 cut(s) | 680, 824 |
| Fnu4HI | GCNGC | 6 cut(s) | 43, 981, 1150, 1180, 1348, 1642 |
| FokI | GGATG | 3 cut(s) | 128, 1221, 2051 |
| FriOI | GRGCYC | 1 cut(s) | 1911 |
| Fsp4HI | GCNGC | 6 cut(s) | 43, 981, 1150, 1180, 1348, 1642 |
| FspBI | CTAG | 4 cut(s) | 260, 834, 1056, 1263 |
| FspI | TGCGCA | 1 cut(s) | 365 |
| GlaI | GCGC | 1 cut(s) | 365 |
| GluI | GCNGC | 6 cut(s) | 43, 981, 1150, 1180, 1348, 1642 |
| GsaI | CCCAGC | 2 cut(s) | 112, 346 |
| GsuI | CTGGAG | 2 cut(s) | 819, 1814 |
| HaeIII | GGCC | 5 cut(s) | 1244, 1350, 1541, 1653, 2050 |
| HapII | CCGG | 2 cut(s) | 782, 1521 |
| HhaI | GCGC | 1 cut(s) | 366 |
| Hin1II | CATG | 8 cut(s) | 230, 508, 1146, 1197, 1290, 1435, 1681, 1699 |
| Hin6I | GCGC | 1 cut(s) | 364 |
| HinP1I | GCGC | 1 cut(s) | 364 |
| HincII | GTYRAC | 3 cut(s) | 681, 1450, 1950 |
| HindII | GTYRAC | 3 cut(s) | 681, 1450, 1950 |
| HindIII | AAGCTT | 1 cut(s) | 1233 |
| HinfI | GANTC | 5 cut(s) | 380, 483, 596, 941, 1588 |
| HpaI | GTTAAC | 1 cut(s) | 1950 |
| HpaII | CCGG | 2 cut(s) | 782, 1521 |
| HphI | GGTGA | 3 cut(s) | 119, 194, 326 |
| Hpy166II | GTNNAC | 5 cut(s) | 681, 825, 1364, 1450, 1950 |
| Hpy8I | GTNNAC | 5 cut(s) | 681, 825, 1364, 1450, 1950 |
| HpyAV | CCTTC | 3 cut(s) | 224, 1530, 1954 |
| HpyCH4IV | ACGT | 2 cut(s) | 635, 1989 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 464, 977, 1241, 1397, 1538, 1650 |
| HpyF3I | CTNAG | 6 cut(s) | 17, 388, 906, 1218, 1494, 1565 |
| HpySE526I | ACGT | 2 cut(s) | 635, 1989 |
| Hsp92II | CATG | 8 cut(s) | 230, 508, 1146, 1197, 1290, 1435, 1681, 1699 |
| HspAI | GCGC | 1 cut(s) | 364 |
| KspAI | GTTAAC | 1 cut(s) | 1950 |
| LmnI | GCTCC | 6 cut(s) | 354, 553, 688, 1377, 1790, 2020 |
| Lsp1109I | GCAGC | 5 cut(s) | 54, 992, 1161, 1191, 1653 |
| LweI | GCATC | 2 cut(s) | 1204, 1878 |
| MaeI | CTAG | 4 cut(s) | 260, 834, 1056, 1263 |
| MaeII | ACGT | 2 cut(s) | 635, 1989 |
| MaeIII | GTNAC | 4 cut(s) | 125, 214, 276, 561 |
| MbiI | CCGCTC | 1 cut(s) | 1980 |
| MfeI | CAATTG | 2 cut(s) | 252, 1328 |
| MflI | RGATCY | 7 cut(s) | 236, 451, 718, 736, 1168, 1855, 2097 |
| MhlI | GDGCHC | 3 cut(s) | 351, 1911, 1999 |
| MlsI | TGGCCA | 1 cut(s) | 1244 |
| MluNI | TGGCCA | 1 cut(s) | 1244 |
| MlyI | GAGTC | 2 cut(s) | 374, 605 |
| MmeI | TCCRAC | 4 cut(s) | 549, 731, 1227, 1923 |
| Mox20I | TGGCCA | 1 cut(s) | 1244 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2080 |
| MscI | TGGCCA | 1 cut(s) | 1244 |
| MseI | TTAA | 9 cut(s) | 204, 530, 578, 615, 750, 1185, 1281, 1688, 1949 |
| MslI | CAYNNNNRTG | 6 cut(s) | 231, 836, 1023, 1430, 1847, 1886 |
| Msp20I | TGGCCA | 1 cut(s) | 1244 |
| MspA1I | CMGCKG | 1 cut(s) | 971 |
| MspI | CCGG | 2 cut(s) | 782, 1521 |
| MspR9I | CCNGG | 2 cut(s) | 1548, 1869 |
| MunI | CAATTG | 2 cut(s) | 252, 1328 |
| Mva1269I | GAATGC | 1 cut(s) | 540 |
| MvaI | CCWGG | 2 cut(s) | 1548, 1869 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 464, 977, 1241, 1397, 1538, 1650 |
| NcoI | CCATGG | 1 cut(s) | 1193 |
| NdeI | CATATG | 1 cut(s) | 592 |
| NlaIII | CATG | 8 cut(s) | 230, 508, 1146, 1197, 1290, 1435, 1681, 1699 |
| NlaIV | GGNNCC | 7 cut(s) | 1379, 1525, 1633, 1749, 1786, 2016, 2083 |
| NmuCI | GTSAC | 3 cut(s) | 125, 276, 561 |
| NsbI | TGCGCA | 1 cut(s) | 365 |
| NspI | RCATGY | 1 cut(s) | 1146 |
| OliI | CACNNNNGTG | 2 cut(s) | 836, 1023 |
| PasI | CCCWGGG | 1 cut(s) | 1868 |
| PciI | ACATGT | 1 cut(s) | 1142 |
| PctI | GAATGC | 1 cut(s) | 540 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2080 |
| PfeI | GAWTC | 3 cut(s) | 483, 941, 1588 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 728 |
| PkrI | GCNGC | 6 cut(s) | 44, 982, 1151, 1181, 1349, 1643 |
| PleI | GAGTC | 2 cut(s) | 374, 604 |
| PpsI | GAGTC | 2 cut(s) | 374, 604 |
| PscI | ACATGT | 1 cut(s) | 1142 |
| PsiI | TTATAA | 1 cut(s) | 921 |
| Psp6I | CCWGG | 2 cut(s) | 1546, 1867 |
| PspFI | CCCAGC | 2 cut(s) | 108, 342 |
| PspGI | CCWGG | 2 cut(s) | 1546, 1867 |
| PspN4I | GGNNCC | 7 cut(s) | 1379, 1525, 1633, 1749, 1786, 2016, 2083 |
| PspPI | GGNCC | 3 cut(s) | 1349, 1539, 1660 |
| PstI | CTGCAG | 2 cut(s) | 44, 244 |
| PstNI | CAGNNNCTG | 1 cut(s) | 269 |
| PsuI | RGATCY | 7 cut(s) | 236, 451, 718, 736, 1168, 1855, 2097 |
| RsaI | GTAC | 2 cut(s) | 122, 1291 |
| RsaNI | GTAC | 2 cut(s) | 121, 1290 |
| RseI | CAYNNNNRTG | 6 cut(s) | 231, 836, 1023, 1430, 1847, 1886 |
| SalI | GTCGAC | 1 cut(s) | 679 |
| SaqAI | TTAA | 9 cut(s) | 204, 530, 578, 615, 750, 1185, 1281, 1688, 1949 |
| SatI | GCNGC | 6 cut(s) | 43, 981, 1150, 1180, 1348, 1642 |
| Sau96I | GGNCC | 3 cut(s) | 1349, 1539, 1660 |
| SchI | GAGTC | 2 cut(s) | 374, 605 |
| ScrFI | CCNGG | 2 cut(s) | 1548, 1869 |
| SduI | GDGCHC | 3 cut(s) | 351, 1911, 1999 |
| SfaNI | GCATC | 2 cut(s) | 1204, 1878 |
| SfcI | CTRYAG | 2 cut(s) | 40, 240 |
| SinI | GGWCC | 1 cut(s) | 1660 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 231, 836, 1023, 1430, 1847, 1886 |
| SpeI | ACTAGT | 1 cut(s) | 1055 |
| SsiI | CCGC | 4 cut(s) | 915, 969, 1347, 1978 |
| SspMI | CTAG | 4 cut(s) | 260, 834, 1056, 1263 |
| StyD4I | CCNGG | 2 cut(s) | 1546, 1867 |
| StyI | CCWWGG | 1 cut(s) | 1193 |
| TaiI | ACGT | 2 cut(s) | 638, 1992 |
| TaqI | TCGA | 4 cut(s) | 354, 680, 1612, 1860 |
| TaqII | GACCGA | 2 cut(s) | 107, 1677 |
| TatI | WGTACW | 1 cut(s) | 1289 |
| TauI | GCSGC | 1 cut(s) | 1350 |
| TfiI | GAWTC | 3 cut(s) | 483, 941, 1588 |
| Tru1I | TTAA | 9 cut(s) | 204, 530, 578, 615, 750, 1185, 1281, 1688, 1949 |
| Tru9I | TTAA | 9 cut(s) | 204, 530, 578, 615, 750, 1185, 1281, 1688, 1949 |
| TscAI | CASTG | 7 cut(s) | 270, 627, 802, 1030, 1245, 1447, 1959 |
| TseFI | GTSAC | 3 cut(s) | 125, 276, 561 |
| TseI | GCWGC | 5 cut(s) | 42, 980, 1149, 1179, 1641 |
| Tsp45I | GTSAC | 3 cut(s) | 125, 276, 561 |
| TspGWI | ACGGA | 2 cut(s) | 676, 1221 |
| TspRI | CASTG | 7 cut(s) | 270, 627, 802, 1030, 1245, 1447, 1959 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 728 |
| VpaK11BI | GGWCC | 1 cut(s) | 1660 |
| XapI | RAATTY | 3 cut(s) | 998, 1043, 1334 |
| XceI | RCATGY | 1 cut(s) | 1146 |
| XmiI | GTMKAC | 2 cut(s) | 680, 824 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2080 |
| XspI | CTAG | 4 cut(s) | 260, 834, 1056, 1263 |