Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016097

Physical Location & Seq

Genomic Coordinates Reverse (-)

411981 .. 412919

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAGGGTTTGATTCCATTTTTGTACAAAGCCATTGTTATGTATAAAAGAGAAGGAAGCTTTTCGTCGGTTTTGCTCAGCGATCATCACTCTCCTTCTAACGCCGGTTATTACATGCGACTTCCTGGCGACTCGTCTAGTAGGTTTCGAACGTCCGATCTCCGACGATTTGGGACGGACCGTTTTGGAATGCTCGAAACGACGCCGTCATCTTCGCCTTCTCGTGTTTCCACTAGGAACATCACCAAACGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

10.34

Isoelectric Point (pI)

77.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37750 AT5G02090
malus_domestica	MD04G1135900.v1.1 MD12G1149400.v1.1
prunus_persica	Prupe.6G261000_v2.0.a1
pyrus_communis	pycom04g12280
rosa_chinensis	RchiOBHm_Chr3g0465351
rosa_laevigata	RLG00000024645
rosa_multiflora	Rmu_sc0011781.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415110
rosa_rugosa	Rorug03G0076300
rosa_samantha	Rh3BG141200 Rh3CG142200 Rh3DG142300
rosa_wichuraiana	Rw3G011550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	2 cut(s)	26, 253
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	126
BfaI	CTAG	2 cut(s)	138, 234
BlpI	GCTNAGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	105
BsiWI	CGTACG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	82, 157
Bsp1720I	GCTNAGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	2 cut(s)	82, 157
BssNI	GRCGYC	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	85, 160
BstMBI	GATC	2 cut(s)	82, 157
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	178
CpoI	CGGWCCG	1 cut(s)	178
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	25, 252
CspI	CGGWCCG	1 cut(s)	178
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	2 cut(s)	32, 60
CviKI_1	RGCY	2 cut(s)	32, 60
CviQI	GTAC	2 cut(s)	25, 252
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	84, 159
DpnII	GATC	2 cut(s)	82, 157
Eco105I	TACGTA	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	118
FaiI	YATR	3 cut(s)	41, 45, 116
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	114
FspBI	CTAG	2 cut(s)	138, 234
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	2 cut(s)	13, 131
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	157, 164
Hpy99I	CGWCG	3 cut(s)	70, 168, 205
HpyAV	CCTTC	3 cut(s)	47, 105, 228
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	3 cut(s)	152, 250, 254
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	3 cut(s)	152, 250, 254
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	82, 157
LpnPI	CCDG	3 cut(s)	111, 118, 138
MaeI	CTAG	2 cut(s)	138, 234
MaeII	ACGT	3 cut(s)	152, 250, 254
MalI	GATC	2 cut(s)	84, 159
MboI	GATC	2 cut(s)	82, 157
MboII	GAAGA	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	82, 157
NlaIII	CATG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	148
PctI	GAATGC	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	13
Pfl23II	CGTACG	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	2 cut(s)	26, 253
RsaNI	GTAC	2 cut(s)	25, 252
RseI	CAYNNNNRTG	1 cut(s)	38
Rsr2I	CGGWCCG	1 cut(s)	178
RsrII	CGGWCCG	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	82, 157
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	5 cut(s)	62, 146, 155, 253, 257
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	38
SnaBI	TACGTA	1 cut(s)	255
SspMI	CTAG	2 cut(s)	138, 234
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	3 cut(s)	155, 253, 257
TaqI	TCGA	2 cut(s)	148, 195
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	178
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	2 cut(s)	138, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.