MD12G1149400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016097
Physical Location & Seq
Forward (+)
22937467 .. 22937727
261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1149400.v1.1.491

Sequence Viewer

Length: 261 bp
ATGGAGGGTTTGATTCCTTTTGTGTACAAGGCCATAGTAGAATACAAGAATGGAAGACAAGGAGGTGGTCATCATGTGTTAAACTCGTGGCTCTGTGAGTCGCCTTCTGTTTCCTATATTCGGTTACCGTCAGGCGACTCGGACCGCTTCGAATCATCGGATTTTCAGCTGTTTTCTGGGACTTCACCAGCTTCTTCAGCTGTCCAAATGATTTCATCTGGAGTTCAGTCCCCATTTCGTCACCGAGTTGCTAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.39

Weight (kDa)

6.82

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37750 AT5G02090
malus_domestica MD04G1135900.v1.1 MD12G1149400.v1.1
prunus_persica Prupe.6G261000_v2.0.a1
pyrus_communis pycom04g12280
rosa_chinensis RchiOBHm_Chr3g0465351
rosa_laevigata RLG00000024645
rosa_multiflora Rmu_sc0011781.1_g000001
rosa_roxburghii Rroxscaffold_6G00415110
rosa_rugosa Rorug03G0076300
rosa_samantha Rh3BG141200 Rh3CG142200 Rh3DG142300
rosa_wichuraiana Rw3G011550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 169, 191, 200
AluI AGCT 3 cut(s) 169, 191, 200
AoxI GGCC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 177, 233
AsuII TTCGAA 1 cut(s) 150
AvaII GGWCC 1 cut(s) 142
BauI CACGAG 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 61
BfaI CTAG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 120
BshFI GGCC 1 cut(s) 32
BslFI GGGAC 2 cut(s) 193, 214
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 193, 214
BsnI GGCC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 24
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 24
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstPI GGTNACC 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 142
CpoI CGGWCCG 1 cut(s) 142
Csp6I GTAC 1 cut(s) 25
CspI CGGWCCG 1 cut(s) 142
CviAII CATG 1 cut(s) 74
CviJI RGCY 5 cut(s) 32, 91, 169, 191, 200
CviKI_1 RGCY 5 cut(s) 32, 91, 169, 191, 200
CviQI GTAC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 123
FaeI CATG 1 cut(s) 77
FaiI YATR 3 cut(s) 35, 75, 117
FaqI GGGAC 2 cut(s) 193, 214
FatI CATG 1 cut(s) 73
FspBI CTAG 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 1 cut(s) 77
HinfI GANTC 4 cut(s) 13, 98, 137, 152
HphI GGTGA 2 cut(s) 177, 233
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 142, 160
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 77
LpnPI CCDG 4 cut(s) 117, 162, 201, 204
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 123, 239, 254
MboII GAAGA 2 cut(s) 66, 186
MlyI GAGTC 2 cut(s) 107, 131
MnlI CCTC 1 cut(s) 56
MseI TTAA 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 169, 200
MwoI GCNNNNNNNGC 1 cut(s) 197
NlaIII CATG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 150
PfeI GAWTC 2 cut(s) 13, 152
PleI GAGTC 2 cut(s) 106, 131
PpsI GAGTC 2 cut(s) 106, 131
PspEI GGTNACC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 142
PvuII CAGCTG 2 cut(s) 169, 200
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 107, 131
SetI ASST 4 cut(s) 67, 171, 193, 202
SfuI TTCGAA 1 cut(s) 150
SinI GGWCC 1 cut(s) 142
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 150
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 2 cut(s) 13, 152
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.