AT2G38000

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016198
Physical Location & Seq
Reverse (-)
15903125 .. 15905391
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38000.1

Sequence Viewer

Length: 1260 bp
ATGGATAAGCCTCTGCTTTCAGGATCAGAGAAAACGAATGAATCCGAGAGGTTGGATTCATACCAATACCTGCAGAGAAATAGCTCATCTGCTCGTAACCCATCTTTCGCCGGAGCTGGCGTCGTCACCGTCGAAGAAATCCGTACCGCTTCTGCTGTTTCTTCTGATCCTCCGTCTCTTTATCCTCCCGTTATCAAGACCCCTGTTTCGTTACCCATTCCTCAAGCTATTGGTTATCCAAGTGCATCTGGAGCAGGTCATGAATTGCAACAAAGGCAGTTTCTTGATGAGATTGAAATAAGAGAGCTGCTTATTGATCATATTGGTCATCGTTGCTGTTGGGGAAGCCGTCCTGCTCGTACATGGAAGATTCATGCTGTTGAAGACTGCAATGTTTATGTCGGAACTCTTGATACTTTCATTGAGGAGAGGGAAGCTTTGACACAGACTGTGCCTTTCACTGGTGGTGAATTCAATGGAAAGAAACATGGATCTGAACCGGGGTTATGGGAACTGGACCTGAGACCGCAGTTTCCTACTCTGTTTGTCCCGTATAAAGAAACTCAAGTCCTGGTTCCTAATTCTGAGACTGTTGAGAAGTGCACAGGTTGCACCGGAAGAGGAGATGTAGTATGTCCAACATGCAATGCTGATGGAGAGCCAGGATTTTACAAGGAGAATCAGATGATGAAGTGTTCCACTTGCTATGGAAGAGGCTTGGTTGCTCATAAAGATGGGTCCGACACAATATGCACCAACTGTAACGGTAAGGGAAAGCTTCCTTGCCCAACTTGCCAATCTCGCGGGTTAATCAAATGTCAGACTTGTGACAGTACTGGTTCTCTTCTGACAAGTAGTATCGCAGTTGTAAAATGGAAGACTCTGTCGAAGCGAAAGGTGAGTGCAACAAGAGGAGCTGGGTCAGTACCAGAAGAAGTATTTGACAGAGCAGAAGGAGTTCAGCTTTGCAACACACAAGCTTACCAGTGCACGCCAGCTTACTTTGCAGACTCATATTTCCTCAACAGATTCTCCTCAGAAGTTATCTCGTTAAGAGCTGAAGTTCCACCGACAGCGAATGTAGTATGTGAGAGACACACCATATCTGTTGTGCCTGTGACTCGTGTCACCATGGAAGATCGTGGGAAAGCGTTCAGCTTTTACATAATCGGTTTTGGTAAGGAGATATACTTGAAAGATTATTACCCAGCAAGATTCTGTTGGGGTTTGTGTCCCTGTCTTGAGTGGTTAAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

46.24

Weight (kDa)

6.42

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 78, 245
AccII CGCG 1 cut(s) 804
AciI CCGC 3 cut(s) 147, 527, 804
AclWI GGATC 3 cut(s) 31, 161, 499
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 1080
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 4 cut(s) 145, 361, 835, 927
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 4 cut(s) 296, 383, 475, 1195
AjnI CCWGG 2 cut(s) 570, 661
Alw21I GWGCWC 2 cut(s) 605, 992
Alw26I GTCTC 4 cut(s) 180, 517, 581, 1087
Alw44I GTGCAC 2 cut(s) 601, 988
AlwI GGATC 3 cut(s) 31, 161, 499
ApaLI GTGCAC 2 cut(s) 601, 988
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 470
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
Asp700I GAANNNNTTC 2 cut(s) 957, 1151
AspS9I GGNCC 2 cut(s) 517, 738
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 4 cut(s) 118, 479, 910, 1120
AvaII GGWCC 2 cut(s) 517, 738
BaeGI GKGCMC 2 cut(s) 605, 992
BauI CACGAG 1 cut(s) 1122
BbsI GAAGAC 2 cut(s) 390, 884
Bbv12I GWGCWC 2 cut(s) 605, 992
BbvI GCAGC 1 cut(s) 294
BccI CCATC 3 cut(s) 109, 647, 728
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 2 cut(s) 572, 663
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 4 cut(s) 180, 517, 581, 1087
BfmI CTRYAG 1 cut(s) 71
BfuAI ACCTGC 2 cut(s) 78, 245
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 3 cut(s) 501, 572, 663
Bme18I GGWCC 2 cut(s) 517, 738
BmgT120I GGNCC 2 cut(s) 517, 738
BmiI GGNNCC 2 cut(s) 576, 739
BmrFI CCNGG 3 cut(s) 501, 572, 663
BmsI GCATC 1 cut(s) 254
BoxI GACNNNNGTC 1 cut(s) 1124
BpiI GAAGAC 2 cut(s) 390, 884
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 207, 549
BpuMI CCSGG 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 2 cut(s) 500, 1131
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 6 cut(s) 105, 135, 615, 645, 1016, 1046
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 4 cut(s) 466, 519, 841, 985
Bse3DI GCAATG 2 cut(s) 397, 652
BseBI CCWGG 2 cut(s) 572, 663
BseDI CCNNGG 2 cut(s) 500, 1131
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 2 cut(s) 397, 652
BseMII CTCAG 3 cut(s) 512, 576, 1050
BseNI ACTGG 4 cut(s) 466, 519, 841, 985
BseRI GAGGAG 4 cut(s) 440, 636, 927, 1024
BseSI GKGCMC 2 cut(s) 605, 992
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 2 cut(s) 917, 1207
Bsh1236I CGCG 1 cut(s) 804
BsiHKAI GWGCWC 2 cut(s) 605, 992
BsiSI CCGG 3 cut(s) 111, 500, 615
BslFI GGGAC 2 cut(s) 533, 1218
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 4 cut(s) 180, 517, 581, 1087
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 533, 1218
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 605, 992
Bsp143I GATC 5 cut(s) 23, 166, 316, 491, 1138
Bsp19I CCATGG 1 cut(s) 1131
BspACI CCGC 3 cut(s) 147, 527, 804
BspCNI CTCAG 3 cut(s) 513, 577, 1049
BspFNI CGCG 1 cut(s) 804
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 576, 739
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 2 cut(s) 78, 245
BspPI GGATC 3 cut(s) 31, 161, 499
BspTNI GGTCTC 1 cut(s) 517
BsrDI GCAATG 2 cut(s) 397, 652
BsrI ACTGG 4 cut(s) 466, 519, 841, 985
BssECI CCNNGG 2 cut(s) 500, 1131
BssMI GATC 5 cut(s) 23, 166, 316, 491, 1138
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 1131
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 2 cut(s) 572, 663
Bst4CI ACNGT 6 cut(s) 130, 451, 592, 761, 767, 833
Bst6I CTCTTC 3 cut(s) 613, 706, 849
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 609
BstC8I GCNNGC 3 cut(s) 118, 992, 996
BstDEI CTNAG 3 cut(s) 521, 585, 1036
BstDSI CCRYGG 1 cut(s) 1131
BstFNI CGCG 1 cut(s) 804
BstKTI GATC 5 cut(s) 26, 169, 319, 494, 1141
BstMAI GTCTC 4 cut(s) 180, 517, 581, 1087
BstMBI GATC 5 cut(s) 23, 166, 316, 491, 1138
BstMWI GCNNNNNNNGC 6 cut(s) 251, 274, 609, 792, 801, 1004
BstNI CCWGG 2 cut(s) 572, 663
BstNSI RCATGY 1 cut(s) 645
BstPAI GACNNNNGTC 1 cut(s) 1124
BstSCI CCNGG 3 cut(s) 499, 570, 661
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 2 cut(s) 605, 992
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 2 cut(s) 390, 884
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BtgI CCRYGG 1 cut(s) 1131
BtsIMutI CAGTG 2 cut(s) 459, 992
BveI ACCTGC 2 cut(s) 78, 245
Cac8I GCNNGC 3 cut(s) 118, 992, 996
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 517, 738
CseI GACGC 1 cut(s) 109
Csp6I GTAC 4 cut(s) 144, 360, 834, 926
CviAII CATG 6 cut(s) 260, 363, 374, 488, 642, 1132
CviQI GTAC 4 cut(s) 144, 360, 834, 926
DdeI CTNAG 3 cut(s) 521, 585, 1036
DpnI GATC 5 cut(s) 25, 168, 318, 493, 1140
DpnII GATC 5 cut(s) 23, 166, 316, 491, 1138
Eam1104I CTCTTC 3 cut(s) 613, 706, 849
EarI CTCTTC 3 cut(s) 613, 706, 849
Eco130I CCWWGG 1 cut(s) 1131
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 2 cut(s) 517, 738
Eco57I CTGAAG 1 cut(s) 1080
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 570, 661
EcoT14I CCWWGG 1 cut(s) 1131
ErhI CCWWGG 1 cut(s) 1131
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 6 cut(s) 263, 366, 377, 491, 645, 1135
FaqI GGGAC 2 cut(s) 533, 1218
FatI CATG 6 cut(s) 259, 362, 373, 487, 641, 1131
FauI CCCGC 1 cut(s) 797
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 308
GsaI CCCAGC 2 cut(s) 921, 1211
GsuI CTGGAG 1 cut(s) 270
HapII CCGG 3 cut(s) 111, 500, 615
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 6 cut(s) 263, 366, 377, 491, 645, 1135
HindIII AAGCTT 3 cut(s) 435, 776, 978
HinfI GANTC 9 cut(s) 41, 56, 370, 679, 880, 1010, 1029, 1120, 1215
HpaII CCGG 3 cut(s) 111, 500, 615
HphI GGTGA 4 cut(s) 118, 479, 910, 1120
Hpy166II GTNNAC 2 cut(s) 603, 990
Hpy188III TCNNGA 7 cut(s) 21, 196, 249, 260, 284, 410, 1241
Hpy8I GTNNAC 2 cut(s) 603, 990
Hpy99I CGWCG 2 cut(s) 125, 134
HpyAV CCTTC 1 cut(s) 947
HpyCH4III ACNGT 6 cut(s) 130, 451, 592, 761, 767, 833
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 274, 609, 792, 801, 1004
HpyF3I CTNAG 3 cut(s) 521, 585, 1036
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 6 cut(s) 263, 366, 377, 491, 645, 1135
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 5 cut(s) 23, 166, 316, 491, 1138
LmnI GCTCC 3 cut(s) 113, 251, 914
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 254
MaeIII GTNAC 7 cut(s) 95, 124, 210, 761, 827, 1117, 1126
MalI GATC 5 cut(s) 25, 168, 318, 493, 1140
MboI GATC 5 cut(s) 23, 166, 316, 491, 1138
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 2 cut(s) 605, 992
MluCI AATT 3 cut(s) 263, 470, 580
MlyI GAGTC 3 cut(s) 874, 1004, 1114
MmeI TCCRAC 4 cut(s) 33, 382, 662, 765
MroXI GAANNNNTTC 2 cut(s) 957, 1151
MseI TTAA 3 cut(s) 809, 1052, 1250
MslI CAYNNNNRTG 1 cut(s) 732
MspI CCGG 3 cut(s) 111, 500, 615
MspR9I CCNGG 3 cut(s) 501, 572, 663
MvaI CCWGG 2 cut(s) 572, 663
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 6 cut(s) 251, 274, 609, 792, 801, 1004
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 1131
NdeII GATC 5 cut(s) 23, 166, 316, 491, 1138
NlaIII CATG 6 cut(s) 263, 366, 377, 491, 645, 1135
NlaIV GGNNCC 2 cut(s) 576, 739
NmuCI GTSAC 4 cut(s) 124, 827, 1117, 1126
NspI RCATGY 1 cut(s) 645
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 2 cut(s) 957, 1151
PfeI GAWTC 6 cut(s) 41, 56, 370, 679, 1029, 1215
PflFI GACNNNGTC 1 cut(s) 883
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 3 cut(s) 874, 1004, 1114
PpsI GAGTC 3 cut(s) 874, 1004, 1114
PshAI GACNNNNGTC 1 cut(s) 1124
Psp6I CCWGG 2 cut(s) 570, 661
PspFI CCCAGC 2 cut(s) 917, 1207
PspGI CCWGG 2 cut(s) 570, 661
PspN4I GGNNCC 2 cut(s) 576, 739
PspPI GGNCC 2 cut(s) 517, 738
PsrI GAACNNNNNNTAC 2 cut(s) 397, 429
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 883
RsaI GTAC 4 cut(s) 145, 361, 835, 927
RsaNI GTAC 4 cut(s) 144, 360, 834, 926
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 3 cut(s) 809, 1052, 1250
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 5 cut(s) 23, 166, 316, 491, 1138
Sau96I GGNCC 2 cut(s) 517, 738
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 3 cut(s) 874, 1004, 1114
ScrFI CCNGG 3 cut(s) 501, 572, 663
SduI GDGCHC 2 cut(s) 605, 992
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 2 cut(s) 517, 738
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 222, 564, 1241
SmoI CTYRAG 3 cut(s) 222, 564, 1241
Sse9I AATT 3 cut(s) 263, 470, 580
SsiI CCGC 3 cut(s) 147, 527, 804
StyD4I CCNGG 3 cut(s) 499, 570, 661
StyI CCWWGG 1 cut(s) 1131
TaaI ACNGT 6 cut(s) 130, 451, 592, 761, 767, 833
TaqI TCGA 2 cut(s) 132, 887
TasI AATT 3 cut(s) 263, 470, 580
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 6 cut(s) 41, 56, 370, 679, 1029, 1215
Tru1I TTAA 3 cut(s) 809, 1052, 1250
Tru9I TTAA 3 cut(s) 809, 1052, 1250
TscAI CASTG 2 cut(s) 466, 992
TseFI GTSAC 4 cut(s) 124, 827, 1117, 1126
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 4 cut(s) 124, 827, 1117, 1126
TspDTI ATGAA 6 cut(s) 48, 54, 276, 362, 409, 704
TspGWI ACGGA 2 cut(s) 131, 162
TspRI CASTG 2 cut(s) 466, 992
Tth111I GACNNNGTC 1 cut(s) 883
VneI GTGCAC 2 cut(s) 601, 988
VpaK11BI GGWCC 2 cut(s) 517, 738
XapI RAATTY 1 cut(s) 470
XceI RCATGY 1 cut(s) 645
XmnI GAANNNNTTC 2 cut(s) 957, 1151
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.