Rh3CG133800

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0016198
Physical Location & Seq
Forward (+)
10950392 .. 10954241
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG133800.1

Sequence Viewer

Length: 993 bp
ATGTATAGGCAAACACTGGATGAAGTAGAGATACGGGAGTTGCTCATTGATCATGTTGGCCATAGATGCTGTTGGGGAAGTCGTCCTGCTCGCACCTGGAAAATTCAGAGAGTGGAAGATTGCAACGTTTATGTGGGAACACTAGATACCTTCATTGAAGAAAGGGAAACTGTAAGAGAAACAGAGCCATACCTTGGTGGCAGTTTTGATGGAAGGGATAAGGGACCCGAACTGGGAGTCTGGGAATTGGATTTGAAGTCTCAATTTCCTGTTTTATTTATACCTCATAAAGAATCACGGGAGATAATTCCTCATTCAGAGTCCATTGCGAAATGCTCAGGTTGTGCAGGGCGAGGGGGTACCGTCTGTCCTAAATGCAATGCAAATGAAGAACCTGGATCCTACAAAGAGAACCAGATGACTCAGTGCTCTGCTTGTCATGGAAGGGGCTTACTTGCTCATAAAGATGGATCTGACTCAATATGTGTGACTTGCAATGGCAAGGGACAGATTCCTTGTGCAACATGTGGATCTCGTGGTCTAGTTAAATGTTTGACATGTGAAGGAAGTGGTTCTCTTCGGTCCCGCAATGTTGCCCTTGTTAGATGGAAGACACTTTCAACTAGAAAGGTAAGTGCAACAAGCGGAGCAGCATCTGTTCCCGATGATGTTTTCCACAGAGCCAAAGGGGTCCAGTTGTGCAACTCCCAGGCACATCAATGCACTCCAGCCTTCTTTGCCGACTCTTATTTCCTCAACAAGTTCTCATCGGAAGTCATCGCAGACAGAGCTCCTGTGCCTGTCTCTGCAAGGGTCATAAGCGAAAGGCACACCATATCCGTAGTTCCAGTGACACGCGTCACAATGGCTCATCGCAACCGATTATTCAGTTTCTACATCATTGGGTTTAGCAGGGAGGTGTATCTAAAGGACTACTATCCCTCTCGGTTTTGCTGGGGCTTGTGCCCGTGCTTGGAGTGGTTGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

36.81

Weight (kDa)

8.45

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 194
AccII CGCG 1 cut(s) 858
AciI CCGC 2 cut(s) 586, 645
AclI AACGTT 1 cut(s) 126
AclWI GGATC 4 cut(s) 393, 406, 478, 538
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 3 cut(s) 194, 233, 973
AflIII ACRYGT 3 cut(s) 524, 557, 856
AgsI TTSAA 4 cut(s) 158, 256, 621, 985
AjnI CCWGG 3 cut(s) 95, 394, 708
AluBI AGCT 1 cut(s) 791
AluI AGCT 1 cut(s) 791
Alw21I GWGCWC 2 cut(s) 431, 793
Alw26I GTCTC 2 cut(s) 264, 808
AlwI GGATC 4 cut(s) 393, 406, 478, 538
AlwNI CAGNNNCTG 1 cut(s) 656
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 1 cut(s) 102
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp700I GAANNNNTTC 1 cut(s) 571
Asp718I GGTACC 1 cut(s) 359
AspS9I GGNCC 3 cut(s) 224, 582, 691
AvaII GGWCC 3 cut(s) 224, 582, 691
BaeGI GKGCMC 1 cut(s) 968
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BalI TGGCCA 1 cut(s) 60
BamHI GGATCC 1 cut(s) 398
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 793
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BauI CACGAG 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 2 cut(s) 431, 793
BbvI GCAGC 1 cut(s) 662
BccI CCATC 3 cut(s) 203, 461, 600
BciT130I CCWGG 3 cut(s) 97, 396, 710
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 264, 808
BfaI CTAG 3 cut(s) 143, 542, 624
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
Bme1390I CCNGG 3 cut(s) 97, 396, 710
Bme18I GGWCC 3 cut(s) 224, 582, 691
BmgT120I GGNCC 3 cut(s) 224, 582, 691
BmiI GGNNCC 6 cut(s) 225, 226, 361, 400, 584, 692
BmrFI CCNGG 3 cut(s) 97, 396, 710
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 56, 662
BmuI ACTGGG 1 cut(s) 242
BoxI GACNNNNGTC 1 cut(s) 857
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 193, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 233, 973
Bse1I ACTGG 4 cut(s) 21, 237, 694, 848
Bse3DI GCAATG 4 cut(s) 324, 385, 502, 595
BseBI CCWGG 3 cut(s) 97, 396, 710
BseDI CCNNGG 2 cut(s) 193, 708
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 3 cut(s) 194, 233, 973
BseMI GCAATG 4 cut(s) 324, 385, 502, 595
BseMII CTCAG 2 cut(s) 351, 437
BseNI ACTGG 4 cut(s) 21, 237, 694, 848
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 1 cut(s) 662
BseYI CCCAGC 1 cut(s) 954
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 858
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 359
BsiHKAI GWGCWC 2 cut(s) 431, 793
BslFI GGGAC 3 cut(s) 237, 519, 568
BslI CCNNNNNNNGG 3 cut(s) 194, 233, 973
BsmAI GTCTC 2 cut(s) 264, 808
BsmFI GGGAC 3 cut(s) 237, 519, 568
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 3 cut(s) 431, 793, 968
Bsp143I GATC 4 cut(s) 49, 398, 470, 530
BspACI CCGC 2 cut(s) 586, 645
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 350, 436
BspFNI CGCG 1 cut(s) 858
BspLI GGNNCC 6 cut(s) 225, 226, 361, 400, 584, 692
BspPI GGATC 4 cut(s) 393, 406, 478, 538
BspT107I GGYRCC 1 cut(s) 359
BsrDI GCAATG 4 cut(s) 324, 385, 502, 595
BsrI ACTGG 4 cut(s) 21, 237, 694, 848
BssECI CCNNGG 2 cut(s) 193, 708
BssMI GATC 4 cut(s) 49, 398, 470, 530
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 3 cut(s) 97, 396, 710
Bst4CI ACNGT 2 cut(s) 172, 364
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 337, 423
BstF5I GGATG 1 cut(s) 25
BstFNI CGCG 1 cut(s) 858
BstKTI GATC 4 cut(s) 52, 401, 473, 533
BstMAI GTCTC 2 cut(s) 264, 808
BstMBI GATC 4 cut(s) 49, 398, 470, 530
BstMWI GCNNNNNNNGC 3 cut(s) 66, 737, 788
BstNI CCWGG 3 cut(s) 97, 396, 710
BstNSI RCATGY 2 cut(s) 528, 561
BstPAI GACNNNNGTC 1 cut(s) 857
BstSCI CCNGG 3 cut(s) 95, 394, 708
BstSLI GKGCMC 1 cut(s) 968
BstUI CGCG 1 cut(s) 858
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 3 cut(s) 398, 470, 530
BstYI RGATCY 3 cut(s) 398, 470, 530
BsuRI GGCC 1 cut(s) 60
BtgZI GCGATG 2 cut(s) 763, 857
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 3 cut(s) 14, 431, 855
Cac8I GCNNGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 656
Cfr13I GGNCC 3 cut(s) 224, 582, 691
CseI GACGC 1 cut(s) 847
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 53, 440, 525, 558
CviJI RGCY 8 cut(s) 60, 187, 450, 683, 731, 791, 869, 960
CviKI_1 RGCY 8 cut(s) 60, 187, 450, 683, 731, 791, 869, 960
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 337, 423
DpnI GATC 4 cut(s) 51, 400, 472, 532
DpnII GATC 4 cut(s) 49, 398, 470, 530
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 791
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 793
Eco47I GGWCC 3 cut(s) 224, 582, 691
Eco53kI GAGCTC 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 95, 394, 708
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 4 cut(s) 56, 443, 528, 561
FaqI GGGAC 3 cut(s) 237, 519, 568
FatI CATG 4 cut(s) 52, 439, 524, 557
FauI CCCGC 1 cut(s) 593
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 3 cut(s) 143, 542, 624
GluI GCNGC 1 cut(s) 651
GsaI CCCAGC 1 cut(s) 958
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 1 cut(s) 60
HgaI GACGC 1 cut(s) 847
Hin1II CATG 4 cut(s) 56, 443, 528, 561
HinfI GANTC 7 cut(s) 237, 293, 320, 421, 476, 511, 743
Hpy188I TCNGA 4 cut(s) 108, 319, 475, 772
Hpy188III TCNNGA 1 cut(s) 662
HpyAV CCTTC 5 cut(s) 160, 207, 438, 557, 742
HpyCH4III ACNGT 2 cut(s) 172, 364
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 737, 788
HpyF3I CTNAG 2 cut(s) 337, 423
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 4 cut(s) 56, 443, 528, 561
KflI GGGWCCC 1 cut(s) 224
KpnI GGTACC 1 cut(s) 363
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 49, 398, 470, 530
LmnI GCTCC 2 cut(s) 647, 796
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 2 cut(s) 56, 662
MaeI CTAG 3 cut(s) 143, 542, 624
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 487, 850, 859
MalI GATC 4 cut(s) 51, 400, 472, 532
MboI GATC 4 cut(s) 49, 398, 470, 530
MboII GAAGA 5 cut(s) 128, 170, 401, 569, 622
MflI RGATCY 3 cut(s) 398, 470, 530
MhlI GDGCHC 3 cut(s) 431, 793, 968
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 4 cut(s) 102, 245, 263, 306
MluI ACGCGT 1 cut(s) 856
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 5 cut(s) 246, 329, 415, 470, 737
MnlI CCTC 6 cut(s) 294, 321, 347, 764, 910, 952
Mox20I TGGCCA 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 571
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 2 cut(s) 465, 718
Msp20I TGGCCA 1 cut(s) 60
MspR9I CCNGG 3 cut(s) 97, 396, 710
MvaI CCWGG 3 cut(s) 97, 396, 710
MvnI CGCG 1 cut(s) 858
MwoI GCNNNNNNNGC 3 cut(s) 66, 737, 788
NdeII GATC 4 cut(s) 49, 398, 470, 530
NlaIII CATG 4 cut(s) 56, 443, 528, 561
NlaIV GGNNCC 6 cut(s) 225, 226, 361, 400, 584, 692
NmuCI GTSAC 3 cut(s) 487, 850, 859
NspI RCATGY 2 cut(s) 528, 561
PciI ACATGT 2 cut(s) 524, 557
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 293, 511
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 652
PleI GAGTC 5 cut(s) 245, 328, 415, 470, 737
PpsI GAGTC 5 cut(s) 245, 328, 415, 470, 737
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 2 cut(s) 524, 557
PshAI GACNNNNGTC 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 793
Psp1406I AACGTT 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 3 cut(s) 95, 394, 708
PspFI CCCAGC 1 cut(s) 954
PspGI CCWGG 3 cut(s) 95, 394, 708
PspN4I GGNNCC 6 cut(s) 225, 226, 361, 400, 584, 692
PspPI GGNCC 3 cut(s) 224, 582, 691
PspPPI RGGWCCY 1 cut(s) 224
PsrI GAACNNNNNNTAC 2 cut(s) 130, 162
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 3 cut(s) 398, 470, 530
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 2 cut(s) 465, 718
SacI GAGCTC 1 cut(s) 793
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 4 cut(s) 49, 398, 470, 530
Sau96I GGNCC 3 cut(s) 224, 582, 691
SchI GAGTC 5 cut(s) 246, 329, 415, 470, 737
ScrFI CCNGG 3 cut(s) 97, 396, 710
SduI GDGCHC 3 cut(s) 431, 793, 968
SfaNI GCATC 2 cut(s) 56, 662
SinI GGWCC 3 cut(s) 224, 582, 691
SmiMI CAYNNNNRTG 2 cut(s) 465, 718
Sse9I AATT 4 cut(s) 102, 245, 263, 306
SsiI CCGC 2 cut(s) 586, 645
SspMI CTAG 3 cut(s) 143, 542, 624
SstI GAGCTC 1 cut(s) 793
StyD4I CCNGG 3 cut(s) 95, 394, 708
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 172, 364
TaiI ACGT 1 cut(s) 129
TaqII GACCGA 1 cut(s) 570
TasI AATT 4 cut(s) 102, 245, 263, 306
TfiI GAWTC 2 cut(s) 293, 511
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 3 cut(s) 21, 431, 855
TseFI GTSAC 3 cut(s) 487, 850, 859
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 3 cut(s) 487, 850, 859
TspDTI ATGAA 3 cut(s) 36, 142, 402
TspGWI ACGGA 1 cut(s) 829
TspRI CASTG 3 cut(s) 21, 431, 855
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 3 cut(s) 224, 582, 691
XapI RAATTY 1 cut(s) 102
XceI RCATGY 2 cut(s) 528, 561
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 3 cut(s) 143, 542, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.