Prupe.6G269000_v2.0.a1

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016198
Physical Location & Seq
Reverse (-)
25603716 .. 25607193
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G269000.1

Sequence Viewer

Length: 1281 bp
ATGGAGGAGCCTCTGCTTTCTGAGCAAAGAAGTGAATTGGGAGAGAAGGGGAGTGAGAAGTGGAGCTCGTACCAGTACGTGGGAAGAGCTGGCTCTGTGATTCCGACGGCTTCGTTGGCCGGAACTGAAGTCAGCGTTGAAGAGATAAGGTCAGCGGCTGCTGATTCTGATCACTACCCACCTTCTATCCATGCCGCTTTGGTTAGTTCGCCGGAGCCTGATCCTACTGAGCAAGCTGTCGCATATCAAGGTGGATATGGAGGAGGTTTTGGTGGCACCACAAATGAACTCCATAGGCAAATACTGGATGAAGTAGAGATACGAGAGTTGCTCATTGATCATGTTGGCCATAGATGCTGTTGGGGAAGTCGTCCCGCAAGGACCTGGAAAATTCAAAAAGTGGAAGATTGCAACGTTTATGTGGGAACACTAGATACTTTCATTGAAGAAAGGGAAACCATCAGAGAAACAGAGCCAAACCTTGGTGGCAAAATTGATGGAAAGGATAAGGGACCTGAACTTGGAATCTGGGAATTGGATTTAAAGTCTCAGTTTCCTGTTTTGTTTATACCTTATAAAGAATCACGGGAGATAATTCCTCATTCTGAGTCCATTGAAAAATGCTCAGGTTGTGCAGGACGAGGAGATTCTGTGTGTCCTACATGCAATGCAAATCAAGAACCTGGATTCTACAAAGAAAATCTGATGACTCAGTGTTCTGCTTGTCATGGAAGGGGTTTAATTGCTCATAAAGATGGATCTGACTCCATATGTGGGAGTTGCAATGGTAAGGGAAAGATCCCCTGTGCAACTTGTGGATCTCGCGGTCTAATTAAATGTTTGACATGCCAAGGGAGTGGTTCTCTTTTAACACGCAATGTTGGCCTTGTTAGATGGAAGACACTTTCAACTAGAAAGGTGAGTGCAACAAGCGGAGCAGCATCTGTTCCAGATGAGGTTTTCCACAGAGCCAAAGGAGTCCAGCTGTGCAACACCCAGGCATATCAATGCACTCCAGCCTTTTTTGCCGACTCTTTCTTTCTTAATCAGTTCTCTTCCGAAGTCATTGCAGACAGAGCTCCTGTACCTCGTACTGCAAGGGTGATAAGTGAGAGGCACACCATCTCCGTTGTGCCGGTGACGCGTGTCACCATGGCTCATCGTAGCCGGTTGTTCAGCTTCTACATCATTGGGTTTAGCAGGGAGGTGTACTTAAAGGACTACTATCCCGCCAGGTTTTGCTGGGGCTTGTGCCCTTGCCTGGAGTGGTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

46.85

Weight (kDa)

6.29

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 2 cut(s) 79, 482
AccII CGCG 2 cut(s) 825, 1144
AciI CCGC 6 cut(s) 155, 195, 375, 825, 933, 1230
AclI AACGTT 1 cut(s) 414
AclWI GGATC 4 cut(s) 215, 766, 793, 826
AcoI YGGCCR 2 cut(s) 117, 346
AcsI RAATTY 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 5 cut(s) 71, 77, 1086, 1093, 1211
AfiI CCNNNNNNNGG 5 cut(s) 79, 482, 521, 774, 1261
AflIII ACRYGT 1 cut(s) 1142
AgsI TTSAA 6 cut(s) 140, 395, 446, 617, 909, 1273
AjnI CCWGG 5 cut(s) 383, 682, 996, 1232, 1260
AluBI AGCT 6 cut(s) 66, 89, 236, 985, 1079, 1179
AluI AGCT 6 cut(s) 66, 89, 236, 985, 1079, 1179
Alw21I GWGCWC 2 cut(s) 68, 1081
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 4 cut(s) 215, 766, 793, 826
AlwNI CAGNNNCTG 2 cut(s) 158, 944
AoxI GGCC 3 cut(s) 117, 346, 883
ApeKI GCWGC 2 cut(s) 158, 938
ApoI RAATTY 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 381, 512
AsuHPI GGTGA 4 cut(s) 931, 1114, 1141, 1150
AvaII GGWCC 2 cut(s) 381, 512
BaeGI GKGCMC 1 cut(s) 1256
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BalI TGGCCA 1 cut(s) 348
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 2 cut(s) 68, 1081
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 1 cut(s) 905
Bbv12I GWGCWC 2 cut(s) 68, 1081
BbvI GCAGC 2 cut(s) 145, 950
BccI CCATC 5 cut(s) 467, 491, 749, 888, 1130
BceAI ACGGC 1 cut(s) 123
BcgI CGANNNNNNTGC 2 cut(s) 1049, 1083
BciT130I CCWGG 5 cut(s) 385, 684, 998, 1234, 1262
BclI TGATCA 2 cut(s) 169, 337
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 2 cut(s) 431, 912
BisI GCNGC 4 cut(s) 156, 159, 195, 939
BlsI GCNGC 4 cut(s) 157, 160, 196, 940
Bme1390I CCNGG 5 cut(s) 385, 684, 998, 1234, 1262
Bme18I GGWCC 2 cut(s) 381, 512
BmgT120I GGNCC 2 cut(s) 381, 512
BmiI GGNNCC 4 cut(s) 9, 216, 277, 513
BmrFI CCNGG 5 cut(s) 385, 684, 998, 1234, 1262
BmsI GCATC 2 cut(s) 344, 950
BoxI GACNNNNGTC 1 cut(s) 1145
BpiI GAAGAC 1 cut(s) 905
BplI GAGNNNNNCTC 4 cut(s) 315, 347, 847, 879
BpmI CTGGAG 1 cut(s) 999
Bpu10I CCTNAGC 1 cut(s) 625
BsaAI YACGTR 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 168
BsaJI CCNNGG 4 cut(s) 481, 850, 996, 1152
BsaXI ACNNNNNCTCC 4 cut(s) 636, 666, 1109, 1139
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 482, 521, 774, 1261
Bse118I RCCGGY 2 cut(s) 1135, 1167
Bse1I ACTGG 2 cut(s) 73, 309
Bse3DI GCAATG 4 cut(s) 673, 790, 883, 1065
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 5 cut(s) 385, 684, 998, 1234, 1262
BseDI CCNNGG 4 cut(s) 481, 850, 996, 1152
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 5 cut(s) 79, 482, 521, 774, 1261
BseMI GCAATG 4 cut(s) 673, 790, 883, 1065
BseMII CTCAG 6 cut(s) 12, 219, 563, 597, 639, 725
BseNI ACTGG 2 cut(s) 73, 309
BseRI GAGGAG 3 cut(s) 20, 276, 657
BseSI GKGCMC 1 cut(s) 1256
BseXI GCAGC 2 cut(s) 145, 950
BseYI CCCAGC 1 cut(s) 1242
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 2 cut(s) 825, 1144
BshFI GGCC 3 cut(s) 119, 348, 885
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 68, 1081
BsiSI CCGG 4 cut(s) 120, 212, 1136, 1168
BslFI GGGAC 2 cut(s) 357, 525
BslI CCNNNNNNNGG 5 cut(s) 79, 482, 521, 774, 1261
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 2 cut(s) 357, 525
BsnI GGCC 3 cut(s) 119, 348, 885
Bsp1286I GDGCHC 3 cut(s) 68, 1081, 1256
Bsp143I GATC 6 cut(s) 169, 220, 337, 758, 798, 818
Bsp19I CCATGG 1 cut(s) 1152
BspACI CCGC 6 cut(s) 155, 195, 375, 825, 933, 1230
BspANI GGCC 3 cut(s) 119, 348, 885
BspCNI CTCAG 6 cut(s) 13, 220, 562, 598, 638, 724
BspFNI CGCG 2 cut(s) 825, 1144
BspLI GGNNCC 4 cut(s) 9, 216, 277, 513
BspPI GGATC 4 cut(s) 215, 766, 793, 826
BspQI GCTCTTC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 4 cut(s) 673, 790, 883, 1065
BsrFI RCCGGY 2 cut(s) 1135, 1167
BsrI ACTGG 2 cut(s) 73, 309
BssAI RCCGGY 2 cut(s) 1135, 1167
BssECI CCNNGG 4 cut(s) 481, 850, 996, 1152
BssMI GATC 6 cut(s) 169, 220, 337, 758, 798, 818
BssT1I CCWWGG 3 cut(s) 481, 850, 1152
Bst2UI CCWGG 5 cut(s) 385, 684, 998, 1234, 1262
Bst6I CTCTTC 3 cut(s) 79, 135, 1060
BstBAI YACGTR 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 91, 234
BstDEI CTNAG 6 cut(s) 21, 228, 549, 606, 625, 711
BstDSI CCRYGG 1 cut(s) 1152
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 2 cut(s) 825, 1144
BstKTI GATC 6 cut(s) 172, 223, 340, 761, 801, 821
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 6 cut(s) 169, 220, 337, 758, 798, 818
BstMWI GCNNNNNNNGC 7 cut(s) 22, 116, 354, 882, 1025, 1076, 1141
BstNI CCWGG 5 cut(s) 385, 684, 998, 1234, 1262
BstNSI RCATGY 2 cut(s) 666, 849
BstPAI GACNNNNGTC 1 cut(s) 1145
BstSCI CCNGG 5 cut(s) 383, 682, 996, 1232, 1260
BstSLI GKGCMC 1 cut(s) 1256
BstUI CGCG 2 cut(s) 825, 1144
BstV1I GCAGC 2 cut(s) 145, 950
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 3 cut(s) 758, 798, 818
BstXI CCANNNNNNTGG 1 cut(s) 857
BstYI RGATCY 3 cut(s) 758, 798, 818
BsuRI GGCC 3 cut(s) 119, 348, 885
BtgI CCRYGG 1 cut(s) 1152
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 719
Cac8I GCNNGC 2 cut(s) 91, 234
CaiI CAGNNNCTG 2 cut(s) 158, 944
Cfr10I RCCGGY 2 cut(s) 1135, 1167
Cfr13I GGNCC 2 cut(s) 381, 512
CseI GACGC 1 cut(s) 1150
Csp6I GTAC 5 cut(s) 70, 76, 1085, 1092, 1210
CviAII CATG 6 cut(s) 191, 341, 663, 728, 846, 1153
CviQI GTAC 5 cut(s) 70, 76, 1085, 1092, 1210
DdeI CTNAG 6 cut(s) 21, 228, 549, 606, 625, 711
DpnI GATC 6 cut(s) 171, 222, 339, 760, 800, 820
DpnII GATC 6 cut(s) 169, 220, 337, 758, 798, 818
DraI TTTAAA 1 cut(s) 543
EaeI YGGCCR 2 cut(s) 117, 346
Eam1104I CTCTTC 3 cut(s) 79, 135, 1060
EarI CTCTTC 3 cut(s) 79, 135, 1060
Ecl136II GAGCTC 2 cut(s) 66, 1079
Eco130I CCWWGG 3 cut(s) 481, 850, 1152
Eco24I GRGCYC 2 cut(s) 68, 1081
Eco47I GGWCC 2 cut(s) 381, 512
Eco53kI GAGCTC 2 cut(s) 66, 1079
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 2 cut(s) 66, 1079
EcoO109I RGGNCCY 2 cut(s) 381, 512
EcoRII CCWGG 5 cut(s) 383, 682, 996, 1232, 1260
EcoT14I CCWWGG 3 cut(s) 481, 850, 1152
EcoT38I GRGCYC 2 cut(s) 68, 1081
ErhI CCWWGG 3 cut(s) 481, 850, 1152
FaeI CATG 6 cut(s) 194, 344, 666, 731, 849, 1156
FaqI GGGAC 2 cut(s) 357, 525
FatI CATG 6 cut(s) 190, 340, 662, 727, 845, 1152
FauI CCCGC 2 cut(s) 382, 1237
FauNDI CATATG 1 cut(s) 770
FbaI TGATCA 2 cut(s) 169, 337
Fnu4HI GCNGC 4 cut(s) 156, 159, 195, 939
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 2 cut(s) 68, 1081
Fsp4HI GCNGC 4 cut(s) 156, 159, 195, 939
FspBI CTAG 2 cut(s) 431, 912
GluI GCNGC 4 cut(s) 156, 159, 195, 939
GsaI CCCAGC 1 cut(s) 1246
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 3 cut(s) 119, 348, 885
HapII CCGG 4 cut(s) 120, 212, 1136, 1168
HgaI GACGC 1 cut(s) 1150
Hin1II CATG 6 cut(s) 194, 344, 666, 731, 849, 1156
HpaII CCGG 4 cut(s) 120, 212, 1136, 1168
HphI GGTGA 4 cut(s) 931, 1114, 1141, 1150
Hpy166II GTNNAC 1 cut(s) 1210
Hpy188I TCNGA 8 cut(s) 22, 105, 169, 464, 607, 705, 763, 1060
Hpy188III TCNNGA 2 cut(s) 677, 950
Hpy8I GTNNAC 1 cut(s) 1210
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 40, 192, 726
HpyCH4IV ACGT 2 cut(s) 78, 414
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 116, 354, 882, 1025, 1076, 1141
HpyF3I CTNAG 6 cut(s) 21, 228, 549, 606, 625, 711
HpySE526I ACGT 2 cut(s) 78, 414
Hsp92II CATG 6 cut(s) 194, 344, 666, 731, 849, 1156
Ksp22I TGATCA 2 cut(s) 169, 337
Kzo9I GATC 6 cut(s) 169, 220, 337, 758, 798, 818
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 5 cut(s) 7, 63, 214, 935, 1084
Lsp1109I GCAGC 2 cut(s) 145, 950
LweI GCATC 2 cut(s) 344, 950
MaeI CTAG 2 cut(s) 431, 912
MaeII ACGT 2 cut(s) 78, 414
MaeIII GTNAC 2 cut(s) 1138, 1147
MalI GATC 6 cut(s) 171, 222, 339, 760, 800, 820
MboI GATC 6 cut(s) 169, 220, 337, 758, 798, 818
MboII GAAGA 6 cut(s) 96, 152, 416, 458, 910, 1047
MflI RGATCY 3 cut(s) 758, 798, 818
MhlI GDGCHC 3 cut(s) 68, 1081, 1256
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 7 cut(s) 35, 390, 492, 533, 594, 741, 831
MluI ACGCGT 1 cut(s) 1142
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 5 cut(s) 617, 703, 758, 987, 1025
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 9 cut(s) 21, 254, 257, 609, 635, 949, 1098, 1107, 1198
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 6 cut(s) 542, 740, 834, 869, 1044, 1214
MslI CAYNNNNRTG 2 cut(s) 753, 1006
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 2 cut(s) 155, 985
MspI CCGG 4 cut(s) 120, 212, 1136, 1168
MspR9I CCNGG 5 cut(s) 385, 684, 998, 1234, 1262
MvaI CCWGG 5 cut(s) 385, 684, 998, 1234, 1262
MvnI CGCG 2 cut(s) 825, 1144
MwoI GCNNNNNNNGC 7 cut(s) 22, 116, 354, 882, 1025, 1076, 1141
NcoI CCATGG 1 cut(s) 1152
NdeI CATATG 1 cut(s) 770
NdeII GATC 6 cut(s) 169, 220, 337, 758, 798, 818
NlaIII CATG 6 cut(s) 194, 344, 666, 731, 849, 1156
NlaIV GGNNCC 4 cut(s) 9, 216, 277, 513
NmuCI GTSAC 2 cut(s) 1138, 1147
NspI RCATGY 2 cut(s) 666, 849
PciSI GCTCTTC 1 cut(s) 79
PfeI GAWTC 6 cut(s) 100, 164, 525, 581, 647, 687
PflMI CCANNNNNTGG 2 cut(s) 79, 482
PkrI GCNGC 4 cut(s) 157, 160, 196, 940
PleI GAGTC 5 cut(s) 616, 703, 758, 986, 1025
PpsI GAGTC 5 cut(s) 616, 703, 758, 986, 1025
Ppu21I YACGTR 1 cut(s) 79
PpuMI RGGWCCY 2 cut(s) 381, 512
PshAI GACNNNNGTC 1 cut(s) 1145
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 2 cut(s) 68, 1081
Psp1406I AACGTT 1 cut(s) 414
Psp5II RGGWCCY 2 cut(s) 381, 512
Psp6I CCWGG 5 cut(s) 383, 682, 996, 1232, 1260
PspFI CCCAGC 1 cut(s) 1242
PspGI CCWGG 5 cut(s) 383, 682, 996, 1232, 1260
PspN4I GGNNCC 4 cut(s) 9, 216, 277, 513
PspPI GGNCC 2 cut(s) 381, 512
PspPPI RGGWCCY 2 cut(s) 381, 512
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstNI CAGNNNCTG 2 cut(s) 158, 944
PsuI RGATCY 3 cut(s) 758, 798, 818
PvuII CAGCTG 1 cut(s) 985
RsaI GTAC 5 cut(s) 71, 77, 1086, 1093, 1211
RsaNI GTAC 5 cut(s) 70, 76, 1085, 1092, 1210
RseI CAYNNNNRTG 2 cut(s) 753, 1006
SacI GAGCTC 2 cut(s) 68, 1081
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 6 cut(s) 542, 740, 834, 869, 1044, 1214
SatI GCNGC 4 cut(s) 156, 159, 195, 939
Sau3AI GATC 6 cut(s) 169, 220, 337, 758, 798, 818
Sau96I GGNCC 2 cut(s) 381, 512
SchI GAGTC 5 cut(s) 617, 703, 758, 987, 1025
ScrFI CCNGG 5 cut(s) 385, 684, 998, 1234, 1262
SduI GDGCHC 3 cut(s) 68, 1081, 1256
SfaNI GCATC 2 cut(s) 344, 950
SinI GGWCC 2 cut(s) 381, 512
SmiMI CAYNNNNRTG 2 cut(s) 753, 1006
Sse9I AATT 7 cut(s) 35, 390, 492, 533, 594, 741, 831
SsiI CCGC 6 cut(s) 155, 195, 375, 825, 933, 1230
SspMI CTAG 2 cut(s) 431, 912
SstI GAGCTC 2 cut(s) 68, 1081
StyD4I CCNGG 5 cut(s) 383, 682, 996, 1232, 1260
StyI CCWWGG 3 cut(s) 481, 850, 1152
TaiI ACGT 2 cut(s) 81, 417
TasI AATT 7 cut(s) 35, 390, 492, 533, 594, 741, 831
TatI WGTACW 1 cut(s) 1209
TauI GCSGC 2 cut(s) 158, 197
TfiI GAWTC 6 cut(s) 100, 164, 525, 581, 647, 687
Tru1I TTAA 6 cut(s) 542, 740, 834, 869, 1044, 1214
Tru9I TTAA 6 cut(s) 542, 740, 834, 869, 1044, 1214
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 2 cut(s) 1138, 1147
TseI GCWGC 2 cut(s) 158, 938
Tsp45I GTSAC 2 cut(s) 1138, 1147
TspDTI ATGAA 3 cut(s) 300, 324, 430
TspGWI ACGGA 1 cut(s) 1117
TspRI CASTG 1 cut(s) 719
Van91I CCANNNNNTGG 2 cut(s) 79, 482
VpaK11BI GGWCC 2 cut(s) 381, 512
XapI RAATTY 1 cut(s) 390
XceI RCATGY 2 cut(s) 666, 849
XspI CTAG 2 cut(s) 431, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.