FvH4_6g12250

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016198
Physical Location & Seq
Forward (+)
7391176 .. 7394903
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12250.t1

Sequence Viewer

Length: 1281 bp
ATGGAGCAGCCTCTGCTGTCAGAGCAACGAAGTGAATCGGGGGAGAAGTCGAGTGAGAACTGGAGCTCCTACGAGTACGTGGGGAGAACCGGCTCTGTGATTCCGACGGCTGCCTTGGCCGGAACTGAAGTCAGCGTTGAAGAGATACGATCTGCGGCGGCTTATTCCGATCACTACCCACCTTCTCTTCATAGCGCTTTGGTTGGTTCGCCGGAGCCTGATCTTGATGAGCAAGCTGTTGTTTACCAAGGTGGATATGGAGGAGGTCCTGGCAGCACCACAAGTGAGCTTCATAGGCAAACACTGGATGAAATTGAGATACGAGAGTTGCTCATTGATCATGTTGGCCATAGATGCTGTTGGGGAAGTCGTCCTGCTCGGACATGGAAAATTCAAAAAGTGGAAGATTGCAACGTATATGTGGGAACACTAGATACCTTCATTGAGGAAAGGGAAACTGTAAGAGAAACAGAGCCATACCTTGGTGGCAGTATTGATGGAAGGGATAAGGGACCAGAACTGGGAATCTGGGAATTGGATTTGAAGTCTCAATTTCCTGTTTTATTTATACCTCATAAAGAATCACGGGAGATAATTCCTCATTCAGAGTCCATTGCAAAATGCTCGGGTTGTGCTGGGGCAGGGGATACTGTCTGTCCTTCATGCAATGCAAATCAAGAGCCTGGATTCTACAAAGAGAACCAGATGGCTCAGTGCTCGGCTTGTCATGGAAGAGGATTACTTGCTCATAAAGATGGATCTGACTCAATATGTGTGACTTGCAACGGGAAGGGACAAATTCCTTGTGCAACATGCGGATCTCGTGGTTTGATGAAATGTTTGACATGCAAAGGCAGTGGTTCTCTTCGTTCCCGCAATGTTGCCCTTGTTAGATGGAAGACACTTTCAACCAGAAAGGTAAGTGCAACAAGCGGAGCAGCGTCTGTTCCCGACGAAGTTTTCCACAGAGCCCAAGGAGTCCAGTTGTGCAACACACAGGCATATCAGTGCACTCCAGCCTTCTTTGCCGACTCTTACTTTCTCAACAAGTTCTCATCGGAAGTGATTGCCGACAGAGCTCATGTGCCTCCCTCTGCTAGGGTCATAAGCGAAAGGCACACCATATCCGTGGTTCCTGTGACGCGTGTCACAATGGCTCATCGCAGCCGACTGTTCAGTTTCTACATCATTGGGTTTAGCAGGGAGGTGTATCTAAAGGACTACTATCCCTCTCGGTTCTGCTGGGGCTTATGCCCGTGCTTGGAGTGGTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

46.85

Weight (kDa)

6.14

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 1 cut(s) 1144
AciI CCGC 5 cut(s) 155, 158, 816, 874, 933
AclWI GGATC 2 cut(s) 766, 826
AcoI YGGCCR 2 cut(s) 117, 346
AcsI RAATTY 2 cut(s) 390, 798
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 77
AfeI AGCGCT 1 cut(s) 196
AfiI CCNNNNNNNGG 4 cut(s) 482, 521, 1098, 1261
AflIII ACRYGT 1 cut(s) 1142
AgsI TTSAA 5 cut(s) 140, 395, 544, 909, 1273
AjnI CCWGG 2 cut(s) 268, 682
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 4 cut(s) 66, 236, 289, 1079
AluI AGCT 4 cut(s) 66, 236, 289, 1079
Alw21I GWGCWC 4 cut(s) 68, 719, 1013, 1081
Alw26I GTCTC 1 cut(s) 552
Alw44I GTGCAC 1 cut(s) 1009
AlwI GGATC 2 cut(s) 766, 826
AlwNI CAGNNNCTG 2 cut(s) 13, 944
Ama87I CYCGRG 1 cut(s) 625
Aor51HI AGCGCT 1 cut(s) 196
AoxI GGCC 2 cut(s) 117, 346
ApaLI GTGCAC 1 cut(s) 1009
ApeKI GCWGC 5 cut(s) 7, 110, 273, 938, 1164
ApoI RAATTY 2 cut(s) 390, 798
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 266, 512
AvaI CYCGRG 1 cut(s) 625
AvaII GGWCC 2 cut(s) 266, 512
BaeGI GKGCMC 1 cut(s) 1013
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BalI TGGCCA 1 cut(s) 348
BanII GRGCYC 3 cut(s) 68, 973, 1081
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 905
Bbv12I GWGCWC 4 cut(s) 68, 719, 1013, 1081
BbvI GCAGC 5 cut(s) 19, 97, 285, 950, 1176
BccI CCATC 4 cut(s) 491, 700, 749, 888
BceAI ACGGC 1 cut(s) 123
BcgI CGANNNNNNTGC 2 cut(s) 606, 640
BciT130I CCWGG 2 cut(s) 270, 684
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 2 cut(s) 431, 1098
BfoI RGCGCY 1 cut(s) 198
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 7 cut(s) 8, 111, 156, 159, 274, 939, 1165
BlsI GCNGC 7 cut(s) 9, 112, 157, 160, 275, 940, 1166
Bme1390I CCNGG 2 cut(s) 270, 684
Bme18I GGWCC 2 cut(s) 266, 512
BmeT110I CYCGRG 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 266, 512
BmiI GGNNCC 3 cut(s) 216, 513, 1134
BmrFI CCNGG 2 cut(s) 270, 684
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 344
BmuI ACTGGG 1 cut(s) 530
BoxI GACNNNNGTC 1 cut(s) 1145
BpiI GAAGAC 1 cut(s) 905
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 2 cut(s) 82, 999
BsaAI YACGTR 1 cut(s) 79
BsaJI CCNNGG 5 cut(s) 114, 247, 481, 973, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 4 cut(s) 482, 521, 1098, 1261
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 4 cut(s) 65, 309, 525, 982
Bse3DI GCAATG 3 cut(s) 612, 673, 883
BseBI CCWGG 2 cut(s) 270, 684
BseDI CCNNGG 5 cut(s) 114, 247, 481, 973, 1128
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 4 cut(s) 482, 521, 1098, 1261
BseMI GCAATG 3 cut(s) 612, 673, 883
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 4 cut(s) 65, 309, 525, 982
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 1013
BseXI GCAGC 5 cut(s) 19, 97, 285, 950, 1176
BseYI CCCAGC 2 cut(s) 635, 1242
Bsh1236I CGCG 1 cut(s) 1144
BshFI GGCC 2 cut(s) 119, 348
BsiHKAI GWGCWC 4 cut(s) 68, 719, 1013, 1081
BsiHKCI CYCGRG 1 cut(s) 625
BsiSI CCGG 3 cut(s) 90, 120, 212
BslFI GGGAC 2 cut(s) 525, 807
BslI CCNNNNNNNGG 4 cut(s) 482, 521, 1098, 1261
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 2 cut(s) 525, 807
BsnI GGCC 2 cut(s) 119, 348
BsoBI CYCGRG 1 cut(s) 625
Bsp1286I GDGCHC 5 cut(s) 68, 719, 973, 1013, 1081
Bsp143I GATC 6 cut(s) 149, 169, 220, 337, 758, 818
BspACI CCGC 5 cut(s) 155, 158, 816, 874, 933
BspANI GGCC 2 cut(s) 119, 348
BspCNI CTCAG 1 cut(s) 724
BspFNI CGCG 1 cut(s) 1144
BspLI GGNNCC 3 cut(s) 216, 513, 1134
BspPI GGATC 2 cut(s) 766, 826
BsrDI GCAATG 3 cut(s) 612, 673, 883
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 4 cut(s) 65, 309, 525, 982
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 5 cut(s) 114, 247, 481, 973, 1128
BssMI GATC 6 cut(s) 149, 169, 220, 337, 758, 818
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 4 cut(s) 114, 247, 481, 973
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 2 cut(s) 270, 684
Bst4CI ACNGT 3 cut(s) 460, 652, 1173
Bst6I CTCTTC 4 cut(s) 135, 192, 727, 870
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 711
BstDSI CCRYGG 1 cut(s) 1128
BstENI CCTNNNNNAGG 1 cut(s) 1096
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 1144
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 6 cut(s) 152, 172, 223, 340, 761, 821
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 6 cut(s) 149, 169, 220, 337, 758, 818
BstMWI GCNNNNNNNGC 7 cut(s) 13, 22, 116, 295, 354, 1025, 1076
BstNI CCWGG 2 cut(s) 270, 684
BstNSI RCATGY 2 cut(s) 816, 849
BstPAI GACNNNNGTC 1 cut(s) 1145
BstSCI CCNGG 2 cut(s) 268, 682
BstSLI GKGCMC 1 cut(s) 1013
BstUI CGCG 1 cut(s) 1144
BstV1I GCAGC 5 cut(s) 19, 97, 285, 950, 1176
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 2 cut(s) 758, 818
BstXI CCANNNNNNTGG 1 cut(s) 1129
BstYI RGATCY 2 cut(s) 758, 818
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 119, 348
BtgI CCRYGG 1 cut(s) 1128
BtgZI GCGATG 1 cut(s) 1145
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 4 cut(s) 302, 719, 862, 1013
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 2 cut(s) 13, 944
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 266, 512
CseI GACGC 2 cut(s) 930, 1150
Csp6I GTAC 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 838, 873
CviAII CATG 7 cut(s) 341, 384, 663, 728, 813, 846, 1082
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 711
DpnI GATC 6 cut(s) 151, 171, 222, 339, 760, 820
DpnII GATC 6 cut(s) 149, 169, 220, 337, 758, 818
EaeI YGGCCR 2 cut(s) 117, 346
Eam1104I CTCTTC 4 cut(s) 135, 192, 727, 870
EarI CTCTTC 4 cut(s) 135, 192, 727, 870
Ecl136II GAGCTC 2 cut(s) 66, 1079
Eco130I CCWWGG 4 cut(s) 114, 247, 481, 973
Eco24I GRGCYC 3 cut(s) 68, 973, 1081
Eco47I GGWCC 2 cut(s) 266, 512
Eco47III AGCGCT 1 cut(s) 196
Eco53kI GAGCTC 2 cut(s) 66, 1079
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 625
EcoICRI GAGCTC 2 cut(s) 66, 1079
EcoNI CCTNNNNNAGG 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 268, 682
EcoT14I CCWWGG 4 cut(s) 114, 247, 481, 973
EcoT38I GRGCYC 3 cut(s) 68, 973, 1081
ErhI CCWWGG 4 cut(s) 114, 247, 481, 973
FaeI CATG 7 cut(s) 344, 387, 666, 731, 816, 849, 1085
FaqI GGGAC 2 cut(s) 525, 807
FatI CATG 7 cut(s) 340, 383, 662, 727, 812, 845, 1081
FauI CCCGC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 7 cut(s) 8, 111, 156, 159, 274, 939, 1165
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 3 cut(s) 68, 973, 1081
Fsp4HI GCNGC 7 cut(s) 8, 111, 156, 159, 274, 939, 1165
FspBI CTAG 2 cut(s) 431, 1098
GlaI GCGC 1 cut(s) 196
GluI GCNGC 7 cut(s) 8, 111, 156, 159, 274, 939, 1165
GsaI CCCAGC 2 cut(s) 639, 1246
GsuI CTGGAG 2 cut(s) 82, 999
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 2 cut(s) 119, 348
HapII CCGG 3 cut(s) 90, 120, 212
HgaI GACGC 2 cut(s) 930, 1150
HhaI GCGC 1 cut(s) 197
Hin1II CATG 7 cut(s) 344, 387, 666, 731, 816, 849, 1085
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 9 cut(s) 35, 100, 525, 581, 608, 687, 764, 978, 1031
HpaII CCGG 3 cut(s) 90, 120, 212
Hpy166II GTNNAC 2 cut(s) 244, 1011
Hpy188I TCNGA 7 cut(s) 22, 105, 169, 381, 607, 763, 1060
Hpy188III TCNNGA 3 cut(s) 224, 677, 950
Hpy8I GTNNAC 2 cut(s) 244, 1011
Hpy99I CGWCG 2 cut(s) 109, 956
HpyAV CCTTC 6 cut(s) 192, 448, 495, 669, 784, 1030
HpyCH4III ACNGT 3 cut(s) 460, 652, 1173
HpyCH4IV ACGT 2 cut(s) 78, 414
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 22, 116, 295, 354, 1025, 1076
HpyF3I CTNAG 1 cut(s) 711
HpySE526I ACGT 2 cut(s) 78, 414
Hsp92II CATG 7 cut(s) 344, 387, 666, 731, 816, 849, 1085
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 6 cut(s) 149, 169, 220, 337, 758, 818
LmnI GCTCC 5 cut(s) 4, 63, 71, 214, 935
Lsp1109I GCAGC 5 cut(s) 19, 97, 285, 950, 1176
LweI GCATC 1 cut(s) 344
MaeI CTAG 2 cut(s) 431, 1098
MaeII ACGT 2 cut(s) 78, 414
MaeIII GTNAC 3 cut(s) 775, 1138, 1147
MalI GATC 6 cut(s) 151, 171, 222, 339, 760, 820
MboI GATC 6 cut(s) 149, 169, 220, 337, 758, 818
MboII GAAGA 6 cut(s) 152, 179, 416, 744, 857, 910
MflI RGATCY 2 cut(s) 758, 818
MhlI GDGCHC 5 cut(s) 68, 719, 973, 1013, 1081
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 6 cut(s) 312, 390, 533, 551, 594, 798
MluI ACGCGT 1 cut(s) 1142
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 4 cut(s) 617, 758, 987, 1025
MmeI TCCRAC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MslI CAYNNNNRTG 3 cut(s) 753, 1006, 1127
Msp20I TGGCCA 1 cut(s) 348
MspI CCGG 3 cut(s) 90, 120, 212
MspR9I CCNGG 2 cut(s) 270, 684
MvaI CCWGG 2 cut(s) 270, 684
MvnI CGCG 1 cut(s) 1144
MwoI GCNNNNNNNGC 7 cut(s) 13, 22, 116, 295, 354, 1025, 1076
NdeII GATC 6 cut(s) 149, 169, 220, 337, 758, 818
NlaIII CATG 7 cut(s) 344, 387, 666, 731, 816, 849, 1085
NlaIV GGNNCC 3 cut(s) 216, 513, 1134
NmeAIII GCCGAG 1 cut(s) 698
NmuCI GTSAC 3 cut(s) 775, 1138, 1147
NspI RCATGY 2 cut(s) 816, 849
PfeI GAWTC 5 cut(s) 35, 100, 525, 581, 687
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 7 cut(s) 9, 112, 157, 160, 275, 940, 1166
PleI GAGTC 4 cut(s) 616, 758, 986, 1025
PpsI GAGTC 4 cut(s) 616, 758, 986, 1025
Ppu21I YACGTR 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 1145
Psp124BI GAGCTC 2 cut(s) 68, 1081
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 268, 682
PspFI CCCAGC 2 cut(s) 635, 1242
PspGI CCWGG 2 cut(s) 268, 682
PspN4I GGNNCC 3 cut(s) 216, 513, 1134
PspPI GGNCC 2 cut(s) 266, 512
PspPPI RGGWCCY 1 cut(s) 266
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstNI CAGNNNCTG 2 cut(s) 13, 944
PsuI RGATCY 2 cut(s) 758, 818
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 3 cut(s) 753, 1006, 1127
SacI GAGCTC 2 cut(s) 68, 1081
SatI GCNGC 7 cut(s) 8, 111, 156, 159, 274, 939, 1165
Sau3AI GATC 6 cut(s) 149, 169, 220, 337, 758, 818
Sau96I GGNCC 2 cut(s) 266, 512
SchI GAGTC 4 cut(s) 617, 758, 987, 1025
ScrFI CCNGG 2 cut(s) 270, 684
SduI GDGCHC 5 cut(s) 68, 719, 973, 1013, 1081
SfaNI GCATC 1 cut(s) 344
SinI GGWCC 2 cut(s) 266, 512
SmiMI CAYNNNNRTG 3 cut(s) 753, 1006, 1127
Sse9I AATT 6 cut(s) 312, 390, 533, 551, 594, 798
SsiI CCGC 5 cut(s) 155, 158, 816, 874, 933
SspMI CTAG 2 cut(s) 431, 1098
SstI GAGCTC 2 cut(s) 68, 1081
StyD4I CCNGG 2 cut(s) 268, 682
StyI CCWWGG 4 cut(s) 114, 247, 481, 973
TaaI ACNGT 3 cut(s) 460, 652, 1173
TaiI ACGT 2 cut(s) 81, 417
TaqI TCGA 1 cut(s) 50
TasI AATT 6 cut(s) 312, 390, 533, 551, 594, 798
TauI GCSGC 2 cut(s) 158, 161
TfiI GAWTC 5 cut(s) 35, 100, 525, 581, 687
TscAI CASTG 4 cut(s) 309, 719, 862, 1013
TseFI GTSAC 3 cut(s) 775, 1138, 1147
TseI GCWGC 5 cut(s) 7, 110, 273, 938, 1164
Tsp45I GTSAC 3 cut(s) 775, 1138, 1147
TspDTI ATGAA 6 cut(s) 179, 281, 324, 430, 651, 848
TspGWI ACGGA 1 cut(s) 1117
TspRI CASTG 4 cut(s) 309, 719, 862, 1013
Van91I CCANNNNNTGG 1 cut(s) 482
VneI GTGCAC 1 cut(s) 1009
VpaK11BI GGWCC 2 cut(s) 266, 512
XagI CCTNNNNNAGG 1 cut(s) 1096
XapI RAATTY 2 cut(s) 390, 798
XceI RCATGY 2 cut(s) 816, 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XspI CTAG 2 cut(s) 431, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.