RLG00000024726

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016198
Physical Location & Seq
Reverse (-)
38557581 .. 38560649
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024726

Sequence Viewer

Length: 1281 bp
ATGGAGCAGCCTCTGCTTTCAGAGCAACGAAGTGAATCGGGGGAGAAGTCGAGTGAGAACTGGAGCTCCTACCAGTACGTGGGGAGAGCCGGCTCTGTGATCCCGACGGCTTCGTTGGCCGGAACTGAAGTCAGCGTCGAAGAGATACGCTCTGCGGCGGCTTATTCTGAGCACTACCCACCTTCTCTTCACAGCGGTTTGGTTAGTTCGCCGGAGCCTGATCTTGATGAGCAAGCTGTTGTTTACCAAGGTGGATACGCAGGAGGTGCTGGCAGCACCACAAGTGAGTTTCATAGGCAAACACTGGATGAAGTAGAGATACGAGAGTTGCTCATTGATCATGTTGGCCATAGATGCTGTTGGGGAAGTCGTCCTGCTCGCACCTGGAAAATTCAAAGAGTGGAAGATTGCAACGTTTATGTGGGAACACTAGATACCTTCATCGAAGAAAGAGAAACTGTAAGAGAAACAGAGCCATACCTTGGTGGCAGTATTGATGAAAGGGATAAGGGACCAGAACTGGGAGTCTGGGAATTAGATTTGAAGTCTCAATTTCCTGTTTTATTTATACCTCATAAAGAATCACGGGAGATAATTCCTCATTCAGAGTCCATTGCAAAATGCTCAGGTTGTGCAGGGCGAGGGGATACCGTCTGTCCTAAATGCAATGCAAATCAAGAACCTGGATTCTACAAAGAGAACCAGATGACTCAGTGCTCTGCTTGTCATGGAAGGGGCTTACTTGCTCATAAAGATGGATCTGACTCAATATGTGTGACTTGCAATGGCAAGGGACAGATTCCTTGTGCAACATGTGGATCTCGTGGTCTAGTTAAATGTTTGACATGTGAAGGAAGTGGTTCTCTTCGGTCCCGCAATGTTGCCCTTGTTAGATGGAAGACACTTTCAACTAGAAAGGTAAGTGCAACAAGTGGAGCAGCATCTGTTCCCGATGATGTTTTCCACAGAGCCAAAGGGGTCCAATTGTGCAACACCCAGGCGCATCAATGCACTCCAGCCTTCTTTGCCGACTCTTATTTCCTCAACAAGTTCTCATCAGAAGTCATCGCTGACAGAGCTCCTGTGCCTCTCTCTGCAAGGGTCATAAGCGAAAGGCACACCATATCCGTAGTTCCAGTGACACGTGTCACAATGGCTCATCGCAACCGATTGTTCAGTTTCTACATCATTGGGTTTAGCAGGGAGGTGTATCTAAAGGACTACTATCCCTCTCGGTTTTGCTGGGGCTTGTGCCCGTGCTTGGAGTGGCTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

47.05

Weight (kDa)

6.25

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 79, 482
AciI CCGC 4 cut(s) 155, 158, 195, 874
AclI AACGTT 1 cut(s) 414
AclWI GGATC 3 cut(s) 94, 766, 826
AcoI YGGCCR 2 cut(s) 117, 346
AcsI RAATTY 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 147
AcvI CACGTG 1 cut(s) 1145
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 4 cut(s) 79, 482, 521, 1261
AflIII ACRYGT 4 cut(s) 812, 845, 1142, 1144
AgsI TTSAA 3 cut(s) 395, 544, 909
AjnI CCWGG 3 cut(s) 383, 682, 996
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 3 cut(s) 66, 236, 1079
AluI AGCT 3 cut(s) 66, 236, 1079
Alw21I GWGCWC 4 cut(s) 68, 174, 719, 1081
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 3 cut(s) 94, 766, 826
AlwNI CAGNNNCTG 2 cut(s) 13, 944
AoxI GGCC 2 cut(s) 117, 346
ApeKI GCWGC 3 cut(s) 7, 273, 938
ApoI RAATTY 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 3 cut(s) 512, 870, 979
AvaII GGWCC 3 cut(s) 512, 870, 979
BaeGI GKGCMC 1 cut(s) 1256
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BalI TGGCCA 1 cut(s) 348
BanII GRGCYC 2 cut(s) 68, 1081
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BauI CACGAG 1 cut(s) 822
BbrPI CACGTG 1 cut(s) 1145
BbsI GAAGAC 1 cut(s) 905
Bbv12I GWGCWC 4 cut(s) 68, 174, 719, 1081
BbvI GCAGC 3 cut(s) 19, 285, 950
BccI CCATC 2 cut(s) 749, 888
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 385, 684, 998
BciVI GTATCC 2 cut(s) 248, 640
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 3 cut(s) 431, 830, 912
BfuI GTATCC 2 cut(s) 248, 640
BisI GCNGC 5 cut(s) 8, 156, 159, 274, 939
BlsI GCNGC 5 cut(s) 9, 157, 160, 275, 940
Bme1390I CCNGG 3 cut(s) 385, 684, 998
Bme18I GGWCC 3 cut(s) 512, 870, 979
BmgT120I GGNCC 3 cut(s) 512, 870, 979
BmiI GGNNCC 4 cut(s) 216, 513, 872, 980
BmrFI CCNGG 3 cut(s) 385, 684, 998
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 3 cut(s) 344, 950, 1012
BmuI ACTGGG 1 cut(s) 530
BoxI GACNNNNGTC 1 cut(s) 1145
BpiI GAAGAC 1 cut(s) 905
BplI GAGNNNNNCTC 4 cut(s) 134, 166, 315, 347
BpmI CTGGAG 2 cut(s) 82, 999
Bpu10I CCTNAGC 1 cut(s) 625
BsaAI YACGTR 2 cut(s) 79, 1145
BsaJI CCNNGG 3 cut(s) 247, 481, 996
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 482, 521, 1261
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 5 cut(s) 65, 73, 309, 525, 1136
Bse3DI GCAATG 4 cut(s) 612, 673, 790, 883
BseBI CCWGG 3 cut(s) 385, 684, 998
BseDI CCNNGG 3 cut(s) 247, 481, 996
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 4 cut(s) 79, 482, 521, 1261
BseMI GCAATG 4 cut(s) 612, 673, 790, 883
BseMII CTCAG 3 cut(s) 159, 639, 725
BseNI ACTGG 5 cut(s) 65, 73, 309, 525, 1136
BseSI GKGCMC 1 cut(s) 1256
BseXI GCAGC 3 cut(s) 19, 285, 950
BseYI CCCAGC 1 cut(s) 1242
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 2 cut(s) 119, 348
BsiHKAI GWGCWC 4 cut(s) 68, 174, 719, 1081
BsiSI CCGG 3 cut(s) 90, 120, 212
BslFI GGGAC 3 cut(s) 525, 807, 856
BslI CCNNNNNNNGG 4 cut(s) 79, 482, 521, 1261
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 3 cut(s) 525, 807, 856
BsnI GGCC 2 cut(s) 119, 348
Bsp1286I GDGCHC 5 cut(s) 68, 174, 719, 1081, 1256
Bsp143I GATC 5 cut(s) 99, 220, 337, 758, 818
BspACI CCGC 4 cut(s) 155, 158, 195, 874
BspANI GGCC 2 cut(s) 119, 348
BspCNI CTCAG 3 cut(s) 160, 638, 724
BspLI GGNNCC 4 cut(s) 216, 513, 872, 980
BspPI GGATC 3 cut(s) 94, 766, 826
BsrDI GCAATG 4 cut(s) 612, 673, 790, 883
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 5 cut(s) 65, 73, 309, 525, 1136
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 247, 481, 996
BssMI GATC 5 cut(s) 99, 220, 337, 758, 818
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 2 cut(s) 247, 481
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 3 cut(s) 385, 684, 998
Bst4CI ACNGT 2 cut(s) 460, 652
Bst6I CTCTTC 3 cut(s) 135, 192, 870
BstAPI GCANNNNNTGC 2 cut(s) 13, 266
BstBAI YACGTR 2 cut(s) 79, 1145
BstC8I GCNNGC 4 cut(s) 91, 234, 271, 379
BstDEI CTNAG 3 cut(s) 168, 625, 711
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 1003
BstKTI GATC 5 cut(s) 102, 223, 340, 761, 821
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 5 cut(s) 99, 220, 337, 758, 818
BstMWI GCNNNNNNNGC 7 cut(s) 13, 22, 116, 266, 354, 1025, 1076
BstNI CCWGG 3 cut(s) 385, 684, 998
BstNSI RCATGY 2 cut(s) 816, 849
BstPAI GACNNNNGTC 1 cut(s) 1145
BstSCI CCNGG 3 cut(s) 383, 682, 996
BstSLI GKGCMC 1 cut(s) 1256
BstV1I GCAGC 3 cut(s) 19, 285, 950
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 2 cut(s) 758, 818
BstYI RGATCY 2 cut(s) 758, 818
BsuI GTATCC 2 cut(s) 248, 640
BsuRI GGCC 2 cut(s) 119, 348
BtgZI GCGATG 2 cut(s) 1051, 1145
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 3 cut(s) 302, 719, 1143
Cac8I GCNNGC 4 cut(s) 91, 234, 271, 379
CaiI CAGNNNCTG 2 cut(s) 13, 944
CfoI GCGC 1 cut(s) 1003
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 3 cut(s) 512, 870, 979
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 76
CviAII CATG 4 cut(s) 341, 728, 813, 846
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 3 cut(s) 168, 625, 711
DpnI GATC 5 cut(s) 101, 222, 339, 760, 820
DpnII GATC 5 cut(s) 99, 220, 337, 758, 818
EaeI YGGCCR 2 cut(s) 117, 346
Eam1104I CTCTTC 3 cut(s) 135, 192, 870
EarI CTCTTC 3 cut(s) 135, 192, 870
Ecl136II GAGCTC 2 cut(s) 66, 1079
Eco130I CCWWGG 2 cut(s) 247, 481
Eco24I GRGCYC 2 cut(s) 68, 1081
Eco47I GGWCC 3 cut(s) 512, 870, 979
Eco53kI GAGCTC 2 cut(s) 66, 1079
Eco57I CTGAAG 1 cut(s) 147
Eco72I CACGTG 1 cut(s) 1145
EcoICRI GAGCTC 2 cut(s) 66, 1079
EcoRII CCWGG 3 cut(s) 383, 682, 996
EcoT14I CCWWGG 2 cut(s) 247, 481
EcoT38I GRGCYC 2 cut(s) 68, 1081
ErhI CCWWGG 2 cut(s) 247, 481
FaeI CATG 4 cut(s) 344, 731, 816, 849
FaqI GGGAC 3 cut(s) 525, 807, 856
FatI CATG 4 cut(s) 340, 727, 812, 845
FauI CCCGC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 5 cut(s) 8, 156, 159, 274, 939
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 2 cut(s) 68, 1081
Fsp4HI GCNGC 5 cut(s) 8, 156, 159, 274, 939
FspBI CTAG 3 cut(s) 431, 830, 912
GlaI GCGC 1 cut(s) 1002
GluI GCNGC 5 cut(s) 8, 156, 159, 274, 939
GsaI CCCAGC 1 cut(s) 1246
GsuI CTGGAG 2 cut(s) 82, 999
HaeIII GGCC 2 cut(s) 119, 348
HapII CCGG 3 cut(s) 90, 120, 212
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 1003
Hin1II CATG 4 cut(s) 344, 731, 816, 849
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HinfI GANTC 9 cut(s) 35, 525, 581, 608, 687, 709, 764, 799, 1031
HpaII CCGG 3 cut(s) 90, 120, 212
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 22, 169, 607, 763, 1060
Hpy188III TCNNGA 4 cut(s) 103, 224, 677, 950
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 2 cut(s) 109, 140
HpyAV CCTTC 5 cut(s) 192, 448, 726, 845, 1030
HpyCH4III ACNGT 2 cut(s) 460, 652
HpyCH4IV ACGT 3 cut(s) 78, 414, 1144
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 22, 116, 266, 354, 1025, 1076
HpyF3I CTNAG 3 cut(s) 168, 625, 711
HpySE526I ACGT 3 cut(s) 78, 414, 1144
Hsp92II CATG 4 cut(s) 344, 731, 816, 849
HspAI GCGC 1 cut(s) 1001
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 5 cut(s) 99, 220, 337, 758, 818
LmnI GCTCC 6 cut(s) 4, 63, 71, 214, 935, 1084
Lsp1109I GCAGC 3 cut(s) 19, 285, 950
LweI GCATC 3 cut(s) 344, 950, 1012
MaeI CTAG 3 cut(s) 431, 830, 912
MaeII ACGT 3 cut(s) 78, 414, 1144
MaeIII GTNAC 3 cut(s) 775, 1138, 1147
MalI GATC 5 cut(s) 101, 222, 339, 760, 820
MboI GATC 5 cut(s) 99, 220, 337, 758, 818
MboII GAAGA 6 cut(s) 152, 179, 416, 458, 857, 910
MfeI CAATTG 1 cut(s) 983
MflI RGATCY 2 cut(s) 758, 818
MhlI GDGCHC 5 cut(s) 68, 174, 719, 1081, 1256
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 5 cut(s) 390, 533, 551, 594, 983
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 5 cut(s) 534, 617, 703, 758, 1025
MnlI CCTC 9 cut(s) 21, 257, 582, 609, 635, 1052, 1098, 1198, 1240
Mox20I TGGCCA 1 cut(s) 348
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 859
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 834
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 3 cut(s) 90, 120, 212
MspR9I CCNGG 3 cut(s) 385, 684, 998
MunI CAATTG 1 cut(s) 983
MvaI CCWGG 3 cut(s) 385, 684, 998
MwoI GCNNNNNNNGC 7 cut(s) 13, 22, 116, 266, 354, 1025, 1076
NaeI GCCGGC 1 cut(s) 91
NdeII GATC 5 cut(s) 99, 220, 337, 758, 818
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 4 cut(s) 344, 731, 816, 849
NlaIV GGNNCC 4 cut(s) 216, 513, 872, 980
NmuCI GTSAC 3 cut(s) 775, 1138, 1147
NspI RCATGY 2 cut(s) 816, 849
PciI ACATGT 2 cut(s) 812, 845
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 4 cut(s) 35, 581, 687, 799
PflMI CCANNNNNTGG 2 cut(s) 79, 482
PkrI GCNGC 5 cut(s) 9, 157, 160, 275, 940
PleI GAGTC 5 cut(s) 533, 616, 703, 758, 1025
PmaCI CACGTG 1 cut(s) 1145
PmlI CACGTG 1 cut(s) 1145
PpsI GAGTC 5 cut(s) 533, 616, 703, 758, 1025
Ppu21I YACGTR 2 cut(s) 79, 1145
PscI ACATGT 2 cut(s) 812, 845
PshAI GACNNNNGTC 1 cut(s) 1145
Psp124BI GAGCTC 2 cut(s) 68, 1081
Psp1406I AACGTT 1 cut(s) 414
Psp6I CCWGG 3 cut(s) 383, 682, 996
PspCI CACGTG 1 cut(s) 1145
PspFI CCCAGC 1 cut(s) 1242
PspGI CCWGG 3 cut(s) 383, 682, 996
PspN4I GGNNCC 4 cut(s) 216, 513, 872, 980
PspPI GGNCC 3 cut(s) 512, 870, 979
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstNI CAGNNNCTG 2 cut(s) 13, 944
PsuI RGATCY 2 cut(s) 758, 818
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 2 cut(s) 68, 1081
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 5 cut(s) 8, 156, 159, 274, 939
Sau3AI GATC 5 cut(s) 99, 220, 337, 758, 818
Sau96I GGNCC 3 cut(s) 512, 870, 979
SchI GAGTC 5 cut(s) 534, 617, 703, 758, 1025
ScrFI CCNGG 3 cut(s) 385, 684, 998
SduI GDGCHC 5 cut(s) 68, 174, 719, 1081, 1256
SfaNI GCATC 3 cut(s) 344, 950, 1012
SinI GGWCC 3 cut(s) 512, 870, 979
SmiMI CAYNNNNRTG 1 cut(s) 753
Sse9I AATT 5 cut(s) 390, 533, 551, 594, 983
SsiI CCGC 4 cut(s) 155, 158, 195, 874
SspMI CTAG 3 cut(s) 431, 830, 912
SstI GAGCTC 2 cut(s) 68, 1081
StyD4I CCNGG 3 cut(s) 383, 682, 996
StyI CCWWGG 2 cut(s) 247, 481
TaaI ACNGT 2 cut(s) 460, 652
TaiI ACGT 3 cut(s) 81, 417, 1147
TaqI TCGA 3 cut(s) 50, 138, 444
TaqII GACCGA 1 cut(s) 858
TasI AATT 5 cut(s) 390, 533, 551, 594, 983
TauI GCSGC 2 cut(s) 158, 161
TfiI GAWTC 4 cut(s) 35, 581, 687, 799
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 3 cut(s) 309, 719, 1143
TseFI GTSAC 3 cut(s) 775, 1138, 1147
TseI GCWGC 3 cut(s) 7, 273, 938
Tsp45I GTSAC 3 cut(s) 775, 1138, 1147
TspDTI ATGAA 4 cut(s) 281, 324, 430, 513
TspGWI ACGGA 1 cut(s) 1117
TspRI CASTG 3 cut(s) 309, 719, 1143
Van91I CCANNNNNTGG 2 cut(s) 79, 482
VpaK11BI GGWCC 3 cut(s) 512, 870, 979
XapI RAATTY 1 cut(s) 390
XceI RCATGY 2 cut(s) 816, 849
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 3 cut(s) 431, 830, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.