Rorug03G0070400

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016198
Physical Location & Seq
Reverse (-)
5575957 .. 5577243
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0070400.1

Sequence Viewer

Length: 1287 bp
ATGGATCCTCATTTTCACCGTCTCTCTGAAATCCCCTTACCCTTGTCATTTAGCAGTACCTACGCTGGTAGTAGTAGTAGTAGTGGATCTAATCATGATGATCCATGGATGGACCCTAGGATATGGAGGAAGCTCCCAACTCGGATTCTCGACCGCATTATCGCCTTTCTTCCACCACCGGCCTTCTTCCGATCTCGGTGTGTCTGCAGGAGATGGAATGGCCTGTTGTTCACCAACACCTTCCTTCAACTCTTCCTCTATATCTTCCCACACCGTCGCCATTGGTTCCTCTTTTGCAAGGCCGACACCCAGAATCTCATTGATGACAACAACAACAACAGGGCTGAAGGGTACCTTTTCGATCCTTACGAACTCGTATGGTACCGCCTTCCCTTTCCTTTGGTTCCACCATCTGGCTTCTCTCCAGCCGCTTCTTCAGGCGGACTGGTCTGTTGGATTTCGGATAACCCTGCTCCGAAAACCCTACTTCTCTCCAACCCTCTTTCGGGTACCTTAAACCAACTCCCTCCAACCCTAACCTCAAGGTATCAACCCTCCATCGGCTTTACTGTCACCCCTACTTCCATAGACGTCACCCTTGCCGGAGATGACCTCATCAACAATGCCCTAGCTGTAAAGAACTCCACCGCAGAAAGGTTCCGCGTGGATGGAACGGGCTGCTTTCTTCCCACATGGCAGATCACTTCTCCTCTTCCCAGACTCTGCAACTTTGAGTCAGCTGGTAGAATGGTTCATATTAATGGAAGGCTCTACAACATGAGCTACCACCCTTTCAACATCGCAACCTATGACGTGGAAACAGCCAGTTGGTGGGATATTCAGCCACCGATGAAGAGGTTCCTGAAGTGTCCTAGCGTGGTAGAGAGTGGCACAGGGAAGCTTCTGCTGGTTGCGGCTATTGAGAAGAGGTCGCTGATCGTGCCGAAAAGCTTGAGGGTCTGGAGCTTGCAGGAAGGAACTACGTGGGTGGAGATTGAGAGGATGCCTCAACTGCTTTATGATCTGTTCGGTGAGGAGATGGAGTCCTGTGGGAATGGGTTTCACTGCGTTGGCCATGGAGAGTTCATTGTGTTCATGATTCCGGGGAGTTCTCGTCATTTGGGTGTGTTGTTTAATATGAACACCAAACTGTGGAAGTGTATGCCTCCCTGTCCTTTTGTTGGTATGGGTGATCTGAGCCGTGGTTTTGCTTATGAGCCCCGGCTTGCTACTCCGGTCACTTCGCTTCTGAATTATCAGTTCCCTGCTGCTCCATTTCCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

428

Amino Acids

48.34

Weight (kDa)

8.26

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 42 - 79 2.3e-06 F-box-like
Beta-prop_KIB1-4 PF03478 128 - 335 1.6e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 594
Acc65I GGTACC 3 cut(s) 351, 381, 509
AccB1I GGYRCC 3 cut(s) 351, 381, 509
AccB7I CCANNNNNTGG 3 cut(s) 413, 831, 1152
AccII CGCG 1 cut(s) 663
AciI CCGC 7 cut(s) 154, 385, 429, 441, 648, 661, 914
AclWI GGATC 4 cut(s) 12, 94, 95, 356
AcoI YGGCCR 1 cut(s) 1072
AcuI CTGAAG 3 cut(s) 366, 420, 884
AcyI GRCGYC 1 cut(s) 591
AfaI GTAC 4 cut(s) 58, 353, 383, 511
AfiI CCNNNNNNNGG 8 cut(s) 413, 505, 506, 560, 654, 831, 1152, 1181
AgsI TTSAA 2 cut(s) 248, 796
AjiI CACGTC 1 cut(s) 814
AluBI AGCT 7 cut(s) 133, 632, 740, 783, 901, 951, 966
AluI AGCT 7 cut(s) 133, 632, 740, 783, 901, 951, 966
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 4 cut(s) 12, 94, 95, 356
AlwNI CAGNNNCTG 1 cut(s) 723
AoxI GGCC 4 cut(s) 180, 220, 300, 1072
ApeKI GCWGC 2 cut(s) 678, 1268
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 857
Asp718I GGTACC 3 cut(s) 351, 381, 509
AspA2I CCTAGG 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 1104, 1222
AsuHPI GGTGA 6 cut(s) 8, 223, 565, 586, 1043, 1202
AvaII GGWCC 1 cut(s) 112
AvrII CCTAGG 1 cut(s) 116
BalI TGGCCA 1 cut(s) 1074
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 3 cut(s) 351, 381, 509
BanII GRGCYC 1 cut(s) 1221
BbvI GCAGC 2 cut(s) 665, 1255
BccI CCATC 6 cut(s) 103, 207, 418, 566, 662, 1033
BceAI ACGGC 1 cut(s) 1185
BcnI CCSGG 2 cut(s) 1104, 1222
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 3 cut(s) 117, 629, 873
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 4 cut(s) 429, 679, 915, 1269
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 4 cut(s) 430, 680, 916, 1270
Bme1390I CCNGG 2 cut(s) 1104, 1222
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
BmrFI CCNGG 2 cut(s) 1104, 1222
BmsI GCATC 1 cut(s) 993
BplI GAGNNNNNCTC 4 cut(s) 597, 629, 991, 1023
BpmI CTGGAG 2 cut(s) 408, 982
BpuEI CTTGAG 2 cut(s) 526, 973
BpuMI CCSGG 2 cut(s) 1104, 1222
BsaAI YACGTR 1 cut(s) 984
BsaHI GRCGYC 1 cut(s) 591
BsaJI CCNNGG 6 cut(s) 104, 116, 1075, 1103, 1201, 1220
BsaWI WCCGGW 1 cut(s) 1234
BsaXI ACNNNNNCTCC 4 cut(s) 1028, 1058, 1099, 1129
Bsc4I CCNNNNNNNGG 8 cut(s) 413, 505, 506, 560, 654, 831, 1152, 1181
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 450, 825
BseDI CCNNGG 6 cut(s) 104, 116, 1075, 1103, 1201, 1220
BseGI GGATG 3 cut(s) 114, 673, 1008
BseLI CCNNNNNNNGG 8 cut(s) 413, 505, 506, 560, 654, 831, 1152, 1181
BseMII CTCAG 1 cut(s) 1187
BseNI ACTGG 2 cut(s) 450, 825
BseRI GAGGAG 2 cut(s) 699, 1049
BseXI GCAGC 2 cut(s) 665, 1255
Bsh1236I CGCG 1 cut(s) 663
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 4 cut(s) 182, 222, 302, 1074
BshNI GGYRCC 3 cut(s) 351, 381, 509
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 6 cut(s) 179, 603, 1103, 1222, 1235, 1280
BslI CCNNNNNNNGG 8 cut(s) 413, 505, 506, 560, 654, 831, 1152, 1181
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsnI GGCC 4 cut(s) 182, 222, 302, 1074
Bsp1286I GDGCHC 1 cut(s) 1221
Bsp143I GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
Bsp19I CCATGG 2 cut(s) 104, 1075
BspACI CCGC 7 cut(s) 154, 385, 429, 441, 648, 661, 914
BspANI GGCC 4 cut(s) 182, 222, 302, 1074
BspCNI CTCAG 1 cut(s) 1188
BspFNI CGCG 1 cut(s) 663
BspHI TCATGA 2 cut(s) 94, 1095
BspLI GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 4 cut(s) 12, 94, 95, 356
BspT107I GGYRCC 3 cut(s) 351, 381, 509
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 450, 825
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 6 cut(s) 104, 116, 1075, 1103, 1201, 1220
BssMI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
BssNI GRCGYC 1 cut(s) 591
BssT1I CCWWGG 3 cut(s) 104, 116, 1075
Bst4CI ACNGT 4 cut(s) 20, 275, 571, 1152
Bst6I CTCTTC 4 cut(s) 257, 717, 848, 920
BstACI GRCGYC 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 984
BstC8I GCNNGC 2 cut(s) 968, 1227
BstDEI CTNAG 1 cut(s) 1196
BstDSI CCRYGG 3 cut(s) 104, 1075, 1201
BstF5I GGATG 3 cut(s) 114, 673, 1008
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 9 cut(s) 7, 89, 103, 194, 364, 702, 939, 1024, 1195
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 940, 1012
BstSCI CCNGG 2 cut(s) 1102, 1220
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 665, 1255
BstX2I RGATCY 2 cut(s) 4, 86
BstYI RGATCY 2 cut(s) 4, 86
BsuRI GGCC 4 cut(s) 182, 222, 302, 1074
BtgI CCRYGG 3 cut(s) 104, 1075, 1201
BtgZI GCGATG 1 cut(s) 784
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 3 cut(s) 114, 673, 1008
BtsI GCAGTG 1 cut(s) 1063
BtsIMutI CAGTG 1 cut(s) 1063
Cac8I GCNNGC 2 cut(s) 968, 1227
CaiI CAGNNNCTG 1 cut(s) 723
CciI TCATGA 2 cut(s) 94, 1095
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 4 cut(s) 57, 352, 382, 510
CviAII CATG 6 cut(s) 95, 105, 693, 778, 1076, 1096
CviQI GTAC 4 cut(s) 57, 352, 382, 510
DdeI CTNAG 1 cut(s) 1196
DpnI GATC 9 cut(s) 6, 88, 102, 193, 363, 701, 938, 1023, 1194
DpnII GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 4 cut(s) 257, 717, 848, 920
EarI CTCTTC 4 cut(s) 257, 717, 848, 920
EciI GGCGGA 1 cut(s) 456
Eco130I CCWWGG 3 cut(s) 104, 116, 1075
Eco24I GRGCYC 1 cut(s) 1221
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 366, 420, 884
EcoT14I CCWWGG 3 cut(s) 104, 116, 1075
EcoT38I GRGCYC 1 cut(s) 1221
ErhI CCWWGG 3 cut(s) 104, 116, 1075
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 6 cut(s) 94, 104, 692, 777, 1075, 1095
Fnu4HI GCNGC 4 cut(s) 429, 679, 915, 1269
FokI GGATG 3 cut(s) 121, 680, 1015
FriOI GRGCYC 1 cut(s) 1221
Fsp4HI GCNGC 4 cut(s) 429, 679, 915, 1269
FspBI CTAG 3 cut(s) 117, 629, 873
GluI GCNGC 4 cut(s) 429, 679, 915, 1269
GsuI CTGGAG 2 cut(s) 408, 982
HaeIII GGCC 4 cut(s) 182, 222, 302, 1074
HapII CCGG 6 cut(s) 179, 603, 1103, 1222, 1235, 1280
Hin1I GRCGYC 1 cut(s) 591
Hin1II CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
HindIII AAGCTT 2 cut(s) 899, 949
HinfI GANTC 6 cut(s) 145, 313, 720, 734, 1043, 1099
HpaII CCGG 6 cut(s) 179, 603, 1103, 1222, 1235, 1280
HphI GGTGA 6 cut(s) 8, 223, 565, 586, 1043, 1202
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 7 cut(s) 28, 144, 191, 463, 477, 1197, 1251
Hpy188III TCNNGA 5 cut(s) 95, 149, 862, 961, 1096
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 7 cut(s) 193, 250, 254, 341, 398, 759, 968
HpyCH4III ACNGT 4 cut(s) 20, 275, 571, 1152
HpyCH4IV ACGT 3 cut(s) 591, 813, 983
HpyCH4V TGCA 4 cut(s) 207, 297, 726, 970
HpyF10VI GCNNNNNNNGC 2 cut(s) 940, 1012
HpyF3I CTNAG 1 cut(s) 1196
HpySE526I ACGT 3 cut(s) 591, 813, 983
Hsp92I GRCGYC 1 cut(s) 591
Hsp92II CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
KpnI GGTACC 3 cut(s) 355, 385, 513
Kzo9I GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
LmnI GCTCC 4 cut(s) 138, 478, 963, 1276
Lsp1109I GCAGC 2 cut(s) 665, 1255
LweI GCATC 1 cut(s) 993
MaeI CTAG 3 cut(s) 117, 629, 873
MaeII ACGT 3 cut(s) 591, 813, 983
MaeIII GTNAC 3 cut(s) 571, 592, 1237
MalI GATC 9 cut(s) 6, 88, 102, 193, 363, 701, 938, 1023, 1194
MboI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
MboII GAAGA 9 cut(s) 161, 178, 244, 256, 426, 677, 704, 865, 937
MflI RGATCY 2 cut(s) 4, 86
MhlI GDGCHC 1 cut(s) 1221
MlsI TGGCCA 1 cut(s) 1074
MluCI AATT 1 cut(s) 1252
MluNI TGGCCA 1 cut(s) 1074
MlyI GAGTC 3 cut(s) 714, 743, 1052
MmeI TCCRAC 3 cut(s) 434, 519, 554
Mox20I TGGCCA 1 cut(s) 1074
MroXI GAANNNNTTC 1 cut(s) 857
MscI TGGCCA 1 cut(s) 1074
MseI TTAA 3 cut(s) 515, 759, 1134
MslI CAYNNNNRTG 2 cut(s) 759, 1122
Msp20I TGGCCA 1 cut(s) 1074
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 6 cut(s) 179, 603, 1103, 1222, 1235, 1280
MspR9I CCNGG 2 cut(s) 1104, 1222
MvnI CGCG 1 cut(s) 663
MwoI GCNNNNNNNGC 2 cut(s) 940, 1012
NciI CCSGG 2 cut(s) 1104, 1222
NcoI CCATGG 2 cut(s) 104, 1075
NdeII GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
NlaIII CATG 6 cut(s) 98, 108, 696, 781, 1079, 1099
NlaIV GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
NmuCI GTSAC 3 cut(s) 571, 592, 1237
PagI TCATGA 2 cut(s) 94, 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 857
PfeI GAWTC 3 cut(s) 145, 313, 1099
PflMI CCANNNNNTGG 3 cut(s) 413, 831, 1152
PkrI GCNGC 4 cut(s) 430, 680, 916, 1270
PleI GAGTC 3 cut(s) 714, 742, 1051
PpsI GAGTC 3 cut(s) 714, 742, 1051
Ppu21I YACGTR 1 cut(s) 984
PshBI ATTAAT 1 cut(s) 759
PspN4I GGNNCC 9 cut(s) 6, 114, 287, 353, 383, 405, 511, 659, 860
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 723
PsuI RGATCY 2 cut(s) 4, 86
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 4 cut(s) 58, 353, 383, 511
RsaNI GTAC 4 cut(s) 57, 352, 382, 510
RseI CAYNNNNRTG 2 cut(s) 759, 1122
SaqAI TTAA 3 cut(s) 515, 759, 1134
SatI GCNGC 4 cut(s) 429, 679, 915, 1269
Sau3AI GATC 9 cut(s) 4, 86, 100, 191, 361, 699, 936, 1021, 1192
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 3 cut(s) 714, 743, 1052
ScrFI CCNGG 2 cut(s) 1104, 1222
SduI GDGCHC 1 cut(s) 1221
SfaNI GCATC 1 cut(s) 993
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 759, 1122
SmlI CTYRAG 2 cut(s) 541, 952
SmoI CTYRAG 2 cut(s) 541, 952
Sse9I AATT 1 cut(s) 1252
SsiI CCGC 7 cut(s) 154, 385, 429, 441, 648, 661, 914
SspMI CTAG 3 cut(s) 117, 629, 873
StyD4I CCNGG 2 cut(s) 1102, 1220
StyI CCWWGG 3 cut(s) 104, 116, 1075
TaaI ACNGT 4 cut(s) 20, 275, 571, 1152
TaiI ACGT 3 cut(s) 594, 816, 986
TaqI TCGA 2 cut(s) 150, 360
TasI AATT 1 cut(s) 1252
TauI GCSGC 2 cut(s) 431, 917
TfiI GAWTC 3 cut(s) 145, 313, 1099
Tru1I TTAA 3 cut(s) 515, 759, 1134
Tru9I TTAA 3 cut(s) 515, 759, 1134
TscAI CASTG 1 cut(s) 1070
TseFI GTSAC 3 cut(s) 571, 592, 1237
TseI GCWGC 2 cut(s) 678, 1268
Tsp45I GTSAC 3 cut(s) 571, 592, 1237
TspDTI ATGAA 5 cut(s) 743, 866, 1075, 1084, 1154
TspRI CASTG 1 cut(s) 1070
Van91I CCANNNNNTGG 3 cut(s) 413, 831, 1152
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 759
XmaJI CCTAGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 857
XspI CTAG 3 cut(s) 117, 629, 873
ZraI GACGTC 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.