Rroxscaffold_6G00416030

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016198
Physical Location & Seq
Reverse (-)
38122629 .. 38126254
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416030.1

Sequence Viewer

Length: 1284 bp
ATGGAGCAGTCTCTGCTTTCGGAAGAGCAACGAAATGGATCAGAGGAGAAGTCGAGTGAGAACTGGAGCTCGTACCAGTACGTGGGGAGATCCGGCTCTGTGATTCCGACGGCTTCGTTGGCCGGAACTGAAGTCAGCGTCGAAGAGATACGATCAGCGGCGGCTTATTCTGAGCACTACCCACCTTCTCTTCATAGCGGTTTGGTTAGTTCGCCGGAGCCTGATCTTGATGAGCAATCTGTTGTTTACCAAGGCGGATATGGAGGAGGTGCTGGCAGCACCACAAGTGAGTTTCATAGGCAAACACTGGATGAAGTAGAGATACGGGAGTTGCTCATTGATCATGTTGGCCATAGATGCTGTTGGGGAAGTCGTCCTGCTCGCACCTGGAAAATTCAGAGAGTGGAAGATTGCAACGTTTATGTGGGAACACTAGATACCTTCATTGAAGAAAGGGAAACTGTAAGAGAAACAGAGCCATACCTTGGTGGCAGTTTTGATGGAAGGGATAAGGGACCCGAACTGGGAGTCTGGGAATTGGATTTGAAGTCTCAATTTCCTGTTTTATTTGTACCTCATAAAGAATCACGGGAGATAATTCCTCATTCAGAGTCCATTGCGAAATGCTCAGGTTGTGCAGGGCGAGGGGGTACCGTCTGTCCTAAATGCAATGCAAATCAAGAACCTGGATCCTACAAAGAGAACCAGATGGCTCAGTGCTCTGCTTGTCATGGAAGGGGCTTACTTGCTCATAAAGATGGATCCGACTCAATATGTGTGACTTGCAATGGCAAGGGACAGATTCCTTGTGCAACATGTGGCTCTCGTGGTCTAGTTAATTGTTTGACATGTGAAGGAAGTGGTTCTCTTCGGTCCCGCAATGTTGCCCTTGTTAGATGGAAGACACTTTCAACTAGAAAGGTAAGTGCAACAAGCGGAGCAGCATCTGTTCCTGATGATGTTTTCCACAGAGCCAAAGGGGTCCAGTTGTGCAACACCCAGGCACATCAATGCACTCCAGCCTTCTTTGCCGACTCTTATTTCCTCAACAAGTTCTCATCAGAAGTCATCGCTGACAGAGCTCCTGTGCCTCTCTCTGCAAGGGTCATAAGCGAAAGGCACACCATATCCGTAGTTCCAGTGACACGTGTGACAATGGCTCATCGCAACCGATTATTCAGTTTCTACATCATTGGGTTTAGCAGGGAGGTGTATCTAAAGGACTACTATCCCTCTCGGTTTTGCTGGGGCTTGTGTCCGTGCTTGGAGTGGTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

47.0

Weight (kDa)

6.25

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 650
AccB7I CCANNNNNTGG 2 cut(s) 82, 485
AciI CCGC 6 cut(s) 158, 161, 198, 255, 877, 936
AclI AACGTT 1 cut(s) 417
AclWI GGATC 6 cut(s) 46, 84, 684, 697, 756, 769
AcoI YGGCCR 2 cut(s) 120, 349
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 150
AcvI CACGTG 1 cut(s) 1148
AfaI GTAC 4 cut(s) 74, 80, 573, 652
AfiI CCNNNNNNNGG 3 cut(s) 82, 485, 524
AflIII ACRYGT 4 cut(s) 815, 848, 1145, 1147
AgsI TTSAA 4 cut(s) 449, 547, 912, 1276
AjnI CCWGG 3 cut(s) 386, 685, 999
AluBI AGCT 2 cut(s) 69, 1082
AluI AGCT 2 cut(s) 69, 1082
Alw21I GWGCWC 4 cut(s) 71, 177, 722, 1084
Alw26I GTCTC 2 cut(s) 15, 555
AlwI GGATC 6 cut(s) 46, 84, 684, 697, 756, 769
AlwNI CAGNNNCTG 2 cut(s) 13, 947
AoxI GGCC 2 cut(s) 120, 349
ApeKI GCWGC 2 cut(s) 276, 941
ApoI RAATTY 1 cut(s) 393
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
Asp700I GAANNNNTTC 1 cut(s) 862
Asp718I GGTACC 1 cut(s) 650
AspS9I GGNCC 3 cut(s) 515, 873, 982
AvaII GGWCC 3 cut(s) 515, 873, 982
BaeI ACNNNNGTAYC 2 cut(s) 314, 347
BalI TGGCCA 1 cut(s) 351
BamHI GGATCC 2 cut(s) 689, 761
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 2 cut(s) 71, 1084
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BauI CACGAG 1 cut(s) 825
BbrPI CACGTG 1 cut(s) 1148
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 4 cut(s) 71, 177, 722, 1084
BbvI GCAGC 2 cut(s) 288, 953
BccI CCATC 4 cut(s) 494, 703, 752, 891
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 3 cut(s) 388, 687, 1001
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 15, 555
BfaI CTAG 3 cut(s) 434, 833, 915
BisI GCNGC 4 cut(s) 159, 162, 277, 942
BlsI GCNGC 4 cut(s) 160, 163, 278, 943
Bme1390I CCNGG 3 cut(s) 388, 687, 1001
Bme18I GGWCC 3 cut(s) 515, 873, 982
BmgT120I GGNCC 3 cut(s) 515, 873, 982
BmiI GGNNCC 8 cut(s) 219, 516, 517, 652, 691, 763, 875, 983
BmrFI CCNGG 3 cut(s) 388, 687, 1001
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 347, 953
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 908
BpmI CTGGAG 2 cut(s) 85, 1002
Bpu10I CCTNAGC 1 cut(s) 628
BsaAI YACGTR 2 cut(s) 82, 1148
BsaJI CCNNGG 3 cut(s) 250, 484, 999
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 485, 524
Bse1I ACTGG 6 cut(s) 68, 76, 312, 528, 985, 1139
Bse3DI GCAATG 4 cut(s) 615, 676, 793, 886
BseBI CCWGG 3 cut(s) 388, 687, 1001
BseDI CCNNGG 3 cut(s) 250, 484, 999
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 82, 485, 524
BseMI GCAATG 4 cut(s) 615, 676, 793, 886
BseMII CTCAG 3 cut(s) 162, 642, 728
BseNI ACTGG 6 cut(s) 68, 76, 312, 528, 985, 1139
BseRI GAGGAG 2 cut(s) 59, 279
BseXI GCAGC 2 cut(s) 288, 953
BseYI CCCAGC 1 cut(s) 1245
BsgI GTGCAG 1 cut(s) 657
BshFI GGCC 2 cut(s) 122, 351
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 4 cut(s) 71, 177, 722, 1084
BsiSI CCGG 3 cut(s) 93, 123, 215
BslFI GGGAC 3 cut(s) 528, 810, 859
BslI CCNNNNNNNGG 3 cut(s) 82, 485, 524
BsmAI GTCTC 2 cut(s) 15, 555
BsmFI GGGAC 3 cut(s) 528, 810, 859
BsnI GGCC 2 cut(s) 122, 351
Bsp1286I GDGCHC 4 cut(s) 71, 177, 722, 1084
Bsp143I GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
BspACI CCGC 6 cut(s) 158, 161, 198, 255, 877, 936
BspANI GGCC 2 cut(s) 122, 351
BspCNI CTCAG 3 cut(s) 163, 641, 727
BspLI GGNNCC 8 cut(s) 219, 516, 517, 652, 691, 763, 875, 983
BspPI GGATC 6 cut(s) 46, 84, 684, 697, 756, 769
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 650
BsrDI GCAATG 4 cut(s) 615, 676, 793, 886
BsrI ACTGG 6 cut(s) 68, 76, 312, 528, 985, 1139
BssECI CCNNGG 3 cut(s) 250, 484, 999
BssMI GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 250, 484
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 388, 687, 1001
Bst4CI ACNGT 2 cut(s) 463, 655
Bst6I CTCTTC 4 cut(s) 18, 138, 195, 873
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBAI YACGTR 2 cut(s) 82, 1148
BstC8I GCNNGC 2 cut(s) 274, 382
BstDEI CTNAG 3 cut(s) 171, 628, 714
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 7 cut(s) 41, 92, 155, 226, 343, 692, 764
BstMAI GTCTC 2 cut(s) 15, 555
BstMBI GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
BstMWI GCNNNNNNNGC 5 cut(s) 13, 119, 357, 1028, 1079
BstNI CCWGG 3 cut(s) 388, 687, 1001
BstNSI RCATGY 2 cut(s) 819, 852
BstSCI CCNGG 3 cut(s) 386, 685, 999
BstV1I GCAGC 2 cut(s) 288, 953
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 3 cut(s) 89, 689, 761
BstYI RGATCY 3 cut(s) 89, 689, 761
BsuRI GGCC 2 cut(s) 122, 351
BtgZI GCGATG 2 cut(s) 1054, 1148
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 305, 722, 1146
Cac8I GCNNGC 2 cut(s) 274, 382
CaiI CAGNNNCTG 2 cut(s) 13, 947
Cfr13I GGNCC 3 cut(s) 515, 873, 982
CseI GACGC 1 cut(s) 127
Csp6I GTAC 4 cut(s) 73, 79, 572, 651
CviAII CATG 4 cut(s) 344, 731, 816, 849
CviQI GTAC 4 cut(s) 73, 79, 572, 651
DdeI CTNAG 3 cut(s) 171, 628, 714
DpnI GATC 7 cut(s) 40, 91, 154, 225, 342, 691, 763
DpnII GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
EaeI YGGCCR 2 cut(s) 120, 349
Eam1104I CTCTTC 4 cut(s) 18, 138, 195, 873
EarI CTCTTC 4 cut(s) 18, 138, 195, 873
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 2 cut(s) 69, 1082
Eco130I CCWWGG 2 cut(s) 250, 484
Eco24I GRGCYC 2 cut(s) 71, 1084
Eco47I GGWCC 3 cut(s) 515, 873, 982
Eco53kI GAGCTC 2 cut(s) 69, 1082
Eco57I CTGAAG 1 cut(s) 150
Eco72I CACGTG 1 cut(s) 1148
EcoICRI GAGCTC 2 cut(s) 69, 1082
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 386, 685, 999
EcoT14I CCWWGG 2 cut(s) 250, 484
EcoT38I GRGCYC 2 cut(s) 71, 1084
ErhI CCWWGG 2 cut(s) 250, 484
FaeI CATG 4 cut(s) 347, 734, 819, 852
FaqI GGGAC 3 cut(s) 528, 810, 859
FatI CATG 4 cut(s) 343, 730, 815, 848
FauI CCCGC 1 cut(s) 884
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 159, 162, 277, 942
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 2 cut(s) 71, 1084
Fsp4HI GCNGC 4 cut(s) 159, 162, 277, 942
FspBI CTAG 3 cut(s) 434, 833, 915
GluI GCNGC 4 cut(s) 159, 162, 277, 942
GsaI CCCAGC 1 cut(s) 1249
GsuI CTGGAG 2 cut(s) 85, 1002
HaeIII GGCC 2 cut(s) 122, 351
HapII CCGG 3 cut(s) 93, 123, 215
HgaI GACGC 1 cut(s) 127
Hin1II CATG 4 cut(s) 347, 734, 819, 852
HinfI GANTC 7 cut(s) 103, 528, 584, 611, 767, 802, 1034
HpaII CCGG 3 cut(s) 93, 123, 215
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 8 cut(s) 22, 43, 108, 172, 399, 610, 766, 1063
Hpy188III TCNNGA 3 cut(s) 227, 680, 953
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 112, 143
HpyAV CCTTC 6 cut(s) 195, 451, 498, 729, 848, 1033
HpyCH4III ACNGT 2 cut(s) 463, 655
HpyCH4IV ACGT 3 cut(s) 81, 417, 1147
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 119, 357, 1028, 1079
HpyF3I CTNAG 3 cut(s) 171, 628, 714
HpySE526I ACGT 3 cut(s) 81, 417, 1147
Hsp92II CATG 4 cut(s) 347, 734, 819, 852
KflI GGGWCCC 1 cut(s) 515
KpnI GGTACC 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 5 cut(s) 4, 66, 217, 938, 1087
Lsp1109I GCAGC 2 cut(s) 288, 953
LweI GCATC 2 cut(s) 347, 953
MaeI CTAG 3 cut(s) 434, 833, 915
MaeII ACGT 3 cut(s) 81, 417, 1147
MaeIII GTNAC 3 cut(s) 778, 1141, 1150
MalI GATC 7 cut(s) 40, 91, 154, 225, 342, 691, 763
MboI GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
MboII GAAGA 7 cut(s) 35, 155, 182, 419, 461, 860, 913
MflI RGATCY 3 cut(s) 89, 689, 761
MhlI GDGCHC 4 cut(s) 71, 177, 722, 1084
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 5 cut(s) 393, 536, 554, 597, 838
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 4 cut(s) 537, 620, 761, 1028
MmeI TCCRAC 2 cut(s) 131, 789
Mox20I TGGCCA 1 cut(s) 351
MroXI GAANNNNTTC 1 cut(s) 862
MscI TGGCCA 1 cut(s) 351
MseI TTAA 1 cut(s) 837
MslI CAYNNNNRTG 2 cut(s) 756, 1009
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 93, 123, 215
MspR9I CCNGG 3 cut(s) 388, 687, 1001
MvaI CCWGG 3 cut(s) 388, 687, 1001
MwoI GCNNNNNNNGC 5 cut(s) 13, 119, 357, 1028, 1079
NdeII GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
NlaIII CATG 4 cut(s) 347, 734, 819, 852
NlaIV GGNNCC 8 cut(s) 219, 516, 517, 652, 691, 763, 875, 983
NmuCI GTSAC 3 cut(s) 778, 1141, 1150
NspI RCATGY 2 cut(s) 819, 852
PciI ACATGT 2 cut(s) 815, 848
PciSI GCTCTTC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 862
PfeI GAWTC 3 cut(s) 103, 584, 802
PflMI CCANNNNNTGG 2 cut(s) 82, 485
PkrI GCNGC 4 cut(s) 160, 163, 278, 943
PleI GAGTC 4 cut(s) 536, 619, 761, 1028
PmaCI CACGTG 1 cut(s) 1148
PmlI CACGTG 1 cut(s) 1148
PpsI GAGTC 4 cut(s) 536, 619, 761, 1028
Ppu21I YACGTR 2 cut(s) 82, 1148
PpuMI RGGWCCY 1 cut(s) 515
PscI ACATGT 2 cut(s) 815, 848
Psp124BI GAGCTC 2 cut(s) 71, 1084
Psp1406I AACGTT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 3 cut(s) 386, 685, 999
PspCI CACGTG 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 1245
PspGI CCWGG 3 cut(s) 386, 685, 999
PspN4I GGNNCC 8 cut(s) 219, 516, 517, 652, 691, 763, 875, 983
PspPI GGNCC 3 cut(s) 515, 873, 982
PspPPI RGGWCCY 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 421, 453
PstNI CAGNNNCTG 2 cut(s) 13, 947
PsuI RGATCY 3 cut(s) 89, 689, 761
RsaI GTAC 4 cut(s) 74, 80, 573, 652
RsaNI GTAC 4 cut(s) 73, 79, 572, 651
RseI CAYNNNNRTG 2 cut(s) 756, 1009
SacI GAGCTC 2 cut(s) 71, 1084
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 4 cut(s) 159, 162, 277, 942
Sau3AI GATC 7 cut(s) 38, 89, 152, 223, 340, 689, 761
Sau96I GGNCC 3 cut(s) 515, 873, 982
SchI GAGTC 4 cut(s) 537, 620, 761, 1028
ScrFI CCNGG 3 cut(s) 388, 687, 1001
SduI GDGCHC 4 cut(s) 71, 177, 722, 1084
SfaNI GCATC 2 cut(s) 347, 953
SinI GGWCC 3 cut(s) 515, 873, 982
SmiMI CAYNNNNRTG 2 cut(s) 756, 1009
Sse9I AATT 5 cut(s) 393, 536, 554, 597, 838
SsiI CCGC 6 cut(s) 158, 161, 198, 255, 877, 936
SspMI CTAG 3 cut(s) 434, 833, 915
SstI GAGCTC 2 cut(s) 71, 1084
StyD4I CCNGG 3 cut(s) 386, 685, 999
StyI CCWWGG 2 cut(s) 250, 484
TaaI ACNGT 2 cut(s) 463, 655
TaiI ACGT 3 cut(s) 84, 420, 1150
TaqI TCGA 2 cut(s) 53, 141
TaqII GACCGA 1 cut(s) 861
TasI AATT 5 cut(s) 393, 536, 554, 597, 838
TauI GCSGC 2 cut(s) 161, 164
TfiI GAWTC 3 cut(s) 103, 584, 802
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TscAI CASTG 3 cut(s) 312, 722, 1146
TseFI GTSAC 3 cut(s) 778, 1141, 1150
TseI GCWGC 2 cut(s) 276, 941
Tsp45I GTSAC 3 cut(s) 778, 1141, 1150
TspDTI ATGAA 4 cut(s) 182, 284, 327, 433
TspGWI ACGGA 2 cut(s) 1120, 1248
TspRI CASTG 3 cut(s) 312, 722, 1146
Van91I CCANNNNNTGG 2 cut(s) 82, 485
VpaK11BI GGWCC 3 cut(s) 515, 873, 982
XapI RAATTY 1 cut(s) 393
XceI RCATGY 2 cut(s) 819, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 3 cut(s) 434, 833, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.