AT2G38465

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014493
Physical Location & Seq
Reverse (-)
16106210 .. 16106935
726 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38465.1

Sequence Viewer

Length: 255 bp
ATGCAAGACGCCGAGACATCACGACAGCCGGCGAAGTCTTTGTCCGATCGAGTGAAGACTAACTGTTTATCCATGGCAGTAACATGCCAGGAAGGGTTTAGCTATGTCAAAGCCTTTTTTGTTGGCCAGACAAAGAGATTGACGGCAAAGAACGAGAAGGAAGCTACGGAGGCTCATCTAACGGAGACAAAAATGCAAGTTGACGCAACCGATGAAGCAGAGAATGCCAAGAAGAGACTTCATCAATCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.38

Weight (kDa)

7.79

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38465
fragaria_vesca FvH4_4g29130 FvH4_5g34160 FvH4_5g34160
malus_domestica MD08G1204300.v1.1 MD08G1204900.v1.1
prunus_persica Prupe.1G536500_v2.0.a1
pyrus_communis pycom08g17620
rosa_chinensis RchiOBHm_Chr7g0233751
rosa_multiflora Rmu_sc0000740.1_g000046
rosa_roxburghii Rroxscaffold_3G00227020
rosa_rugosa Rorug07G0282400
rosa_samantha Rh7AG439100 Rh7BG411400 Rh7CG458500 Rh7DG428300
rosa_wichuraiana Rw7G036240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 102, 164
AluI AGCT 2 cut(s) 102, 164
Alw26I GTCTC 3 cut(s) 8, 179, 229
AoxI GGCC 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
BalI TGGCCA 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 3 cut(s) 8, 179, 229
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 28
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 1 cut(s) 29
BsmAI GTCTC 3 cut(s) 8, 179, 229
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 72
BspANI GGCC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 72
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 3 cut(s) 8, 179, 229
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 170, 224
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 2 cut(s) 17, 212
CviAII CATG 2 cut(s) 73, 84
CviJI RGCY 6 cut(s) 28, 102, 113, 126, 164, 173
CviKI_1 RGCY 6 cut(s) 28, 102, 113, 126, 164, 173
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 76, 87
FaiI YATR 3 cut(s) 74, 85, 105
FatI CATG 2 cut(s) 72, 83
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 29
HgaI GACGC 2 cut(s) 17, 212
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 76, 87
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HpaII CCGG 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 86, 151
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 4, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 224
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 76, 87
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 42, 74, 101, 140
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 67, 240, 244
MlsI TGGCCA 1 cut(s) 126
MluNI TGGCCA 1 cut(s) 126
MnlI CCTC 1 cut(s) 163
Mox20I TGGCCA 1 cut(s) 126
MroNI GCCGGC 1 cut(s) 28
MscI TGGCCA 1 cut(s) 126
MseI TTAA 1 cut(s) 253
Msp20I TGGCCA 1 cut(s) 126
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 170, 224
NaeI GCCGGC 1 cut(s) 30
NcoI CCATGG 1 cut(s) 72
NdeII GATC 1 cut(s) 46
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 76, 87
NmeAIII GCCGAG 1 cut(s) 37
NspI RCATGY 1 cut(s) 87
PctI GAATGC 1 cut(s) 229
PdiI GCCGGC 1 cut(s) 30
Ple19I CGATCG 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PvuI CGATCG 1 cut(s) 49
SaqAI TTAA 1 cut(s) 253
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 89
SetI ASST 2 cut(s) 104, 166
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 49
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 228, 230
TspGWI ACGGA 2 cut(s) 182, 197
XceI RCATGY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.