Prupe.1G536500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
43826884 .. 43827325
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G536500.1

Sequence Viewer

Length: 270 bp
ATGGAAGGGATGAAAGCATCTTCATCGTCAACCTCATCAAACACAGGCATGATGTCTCGCATGAAGAAAGATTGCTTGTTTTTCTATGTTTCTTTGCAAGAGGGTTTTCGCAATCTTAAGGCCTTCTTCGTTGGTCAGGCTAAGAAGTTGACGGCAAGAAACGAGCAAGAAGCAACGGAAGCAGAGCTTCGCACAAGCAAAATGCAAGTTGAAGCTGCCGATGCAGCTGAGGAAACAAAAAAGAGACTCAGCAACAGCAAATCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.9

Weight (kDa)

9.41

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014493)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 3 cut(s) 187, 215, 227
AluI AGCT 3 cut(s) 187, 215, 227
Alw26I GTCTC 2 cut(s) 60, 238
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 215, 224
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 202, 236
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BcoDI GTCTC 2 cut(s) 60, 238
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 216, 225
BlsI GCNGC 2 cut(s) 217, 226
BmsI GCATC 2 cut(s) 26, 211
Bpu10I CCTNAGC 1 cut(s) 228
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 219, 262
BseXI GCAGC 2 cut(s) 202, 236
BshFI GGCC 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 60, 238
BsnI GGCC 1 cut(s) 122
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 220, 261
BspTI CTTAAG 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 141, 228, 248
BstF5I GGATG 1 cut(s) 15
BstMAI GTCTC 2 cut(s) 60, 238
BstMWI GCNNNNNNNGC 3 cut(s) 179, 221, 224
BstV1I GCAGC 2 cut(s) 202, 236
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 15
CviAII CATG 2 cut(s) 49, 61
CviJI RGCY 5 cut(s) 122, 140, 187, 215, 227
CviKI_1 RGCY 5 cut(s) 122, 140, 187, 215, 227
DdeI CTNAG 3 cut(s) 141, 228, 248
Eco147I AGGCCT 1 cut(s) 122
FaeI CATG 2 cut(s) 52, 64
FaiI YATR 3 cut(s) 50, 62, 87
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 171, 203
FatI CATG 2 cut(s) 48, 60
Fnu4HI GCNGC 2 cut(s) 216, 225
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 216, 225
GluI GCNGC 2 cut(s) 216, 225
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 2 cut(s) 52, 64
HincII GTYRAC 2 cut(s) 30, 150
HindII GTYRAC 2 cut(s) 30, 150
HinfI GANTC 1 cut(s) 246
Hpy166II GTNNAC 2 cut(s) 30, 150
Hpy8I GTNNAC 2 cut(s) 30, 150
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 97, 205, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 221, 224
HpyF3I CTNAG 3 cut(s) 141, 228, 248
Hsp92II CATG 2 cut(s) 52, 64
LpnPI CCDG 2 cut(s) 30, 122
Lsp1109I GCAGC 2 cut(s) 202, 236
LweI GCATC 2 cut(s) 26, 211
MboII GAAGA 3 cut(s) 12, 76, 118
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 3 cut(s) 43, 94, 223
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 227
MspCI CTTAAG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 179, 221, 224
NlaIII CATG 2 cut(s) 52, 64
PceI AGGCCT 1 cut(s) 122
PkrI GCNGC 2 cut(s) 217, 226
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 216, 225
SchI GAGTC 1 cut(s) 240
SetI ASST 4 cut(s) 35, 189, 217, 229
SfaNI GCATC 2 cut(s) 26, 211
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 122
StuI AGGCCT 1 cut(s) 122
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 2 cut(s) 215, 224
TspDTI ATGAA 3 cut(s) 12, 26, 77
TspGWI ACGGA 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.