RchiOBHm_Chr7g0233751

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
58269184 .. 58270193
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20952

Sequence Viewer

Length: 255 bp
ATGGACGACAGGACTGATAGAAAGCAAGCAGAGATTTCTGGTATGTCTCGCATGAAGACGGAATGCATAGCCTTCACAGTTTCGTTGCAAGAGGGTTATCGCTATGTCAAGGCCTTCTTTGTTGGTCAGGCCAAGAAGTTGACGGCAAGAAATGAGAAAGAAGCAGCAGAAGCAGACCTAGTAACTGCCAAAATGCAAGTTGAAGCTACTGATGCAGCCGAGGATACCAAAAACAGACTCAACAAATCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

7.82

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014493)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 51
AoxI GGCC 2 cut(s) 111, 129
ApeKI GCWGC 2 cut(s) 164, 215
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 176, 227
BceAI ACGGC 1 cut(s) 159
BciVI GTATCC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 2 cut(s) 165, 216
BlsI GCNGC 2 cut(s) 166, 217
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 176, 227
BshFI GGCC 2 cut(s) 113, 131
BsmAI GTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 68
BsnI GGCC 2 cut(s) 113, 131
BspANI GGCC 2 cut(s) 113, 131
BssECI CCNNGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 170, 212
BstV1I GCAGC 2 cut(s) 176, 227
BstV2I GAAGAC 1 cut(s) 62
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 113, 131
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 27
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 71, 113, 131, 206, 218
CviKI_1 RGCY 5 cut(s) 71, 113, 131, 206, 218
Eco147I AGGCCT 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 44, 53, 68, 105
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 165, 216
Fsp4HI GCNGC 2 cut(s) 165, 216
FspBI CTAG 1 cut(s) 179
GluI GCNGC 2 cut(s) 165, 216
HaeIII GGCC 2 cut(s) 113, 131
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 237
Hpy166II GTNNAC 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 82, 124
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 66, 88, 196, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 212
Hsp92II CATG 1 cut(s) 55
LpnPI CCDG 2 cut(s) 24, 113
Lsp1109I GCAGC 2 cut(s) 176, 227
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 67
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 2 cut(s) 85, 214
Mph1103I ATGCAT 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 170, 212
NlaIII CATG 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 68
PceI AGGCCT 1 cut(s) 113
PctI GAATGC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 166, 217
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
SatI GCNGC 2 cut(s) 165, 216
SchI GAGTC 1 cut(s) 231
SetI ASST 2 cut(s) 180, 208
SfaNI GCATC 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 113
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 113
TaaI ACNGT 1 cut(s) 79
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 164, 215
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 255
XspI CTAG 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.