Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Forward (+)

27426660 .. 27428403

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAAGGAGGCAAATCCAACACCAAGAAAGCCGACTCCAAGCTTGCTGTGAATAAGAAGCCTGCTAAGGTTACTAGAGCGAGTAAGAAGGCGGCCAAGGACCCTAACAAGCCTAAGAGGCCGGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGGAAGCAGTTCAATAAGGAAAACCCCAACAACAAAGCAGTTTCCGCTGTGGGCAAAGCTGCTGGTGCAAAATGGAAGTCAATGTCTGAGGCTGAGAAGGCACCTTATGTGGCCAAGTCAGACAAGAGGAAGGTTGAGTATGAGAAGTTAATGAAGGCTTATAACATGAAACAGGCTGAAGGCAACACTGCAGCGGAGGAAGAAGGATCTGAGGTGAATGATGATGAGGATGGAGATGAAGAAGGGAGTGATGAGGAGGATGATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

142

Amino Acids

15.68

Weight (kDa)

7.75

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	35 - 107	8.5e-12	HMG-box domain
HMG_box	PF00505	38 - 107	4e-22	HMG (high mobility group) box
HMG_WDHD1	PF24815	41 - 89	6.5e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	3 cut(s)	92, 201, 350
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	3 cut(s)	93, 123, 267
AcuI	CTGAAG	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	2 cut(s)	43, 215
AluI	AGCT	2 cut(s)	43, 215
AlwI	GGATC	1 cut(s)	370
AoxI	GGCC	4 cut(s)	93, 119, 123, 267
ApeKI	GCWGC	2 cut(s)	215, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	100
BalI	TGGCCA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	202, 359
BccI	CCATC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	93, 216, 348
BlsI	GCNGC	3 cut(s)	94, 217, 349
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	2 cut(s)	102, 258
Bpu10I	CCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	391, 421
BseMII	CTCAG	3 cut(s)	234, 240, 357
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	2 cut(s)	202, 359
BshFI	GGCC	4 cut(s)	95, 121, 125, 269
BshNI	GGYRCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	122
BsnI	GGCC	4 cut(s)	95, 121, 125, 269
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	3 cut(s)	92, 201, 350
BspANI	GGCC	4 cut(s)	95, 121, 125, 269
BspCNI	CTCAG	3 cut(s)	235, 241, 358
BspLI	GGNNCC	2 cut(s)	102, 258
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	45, 63, 123
BstDEI	CTNAG	5 cut(s)	66, 114, 243, 249, 366
BstF5I	GGATG	2 cut(s)	391, 421
BstKTI	GATC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 200, 221, 254
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	202, 359
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	4 cut(s)	95, 121, 125, 269
BtsCI	GGATG	2 cut(s)	391, 421
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	133, 342
Cac8I	GCNNGC	3 cut(s)	45, 63, 123
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	100
CviAII	CATG	2 cut(s)	145, 322
DdeI	CTNAG	5 cut(s)	66, 114, 243, 249, 366
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
EaeI	YGGCCR	3 cut(s)	93, 123, 267
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	148, 325
FaiI	YATR	5 cut(s)	146, 264, 297, 318, 323
FatI	CATG	2 cut(s)	144, 321
Fnu4HI	GCNGC	3 cut(s)	93, 216, 348
FokI	GGATG	1 cut(s)	398
FseI	GGCCGGCC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	93, 216, 348
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	3 cut(s)	93, 216, 348
HaeIII	GGCC	4 cut(s)	95, 121, 125, 269
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	148, 325
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	244, 277, 367
Hpy188III	TCNNGA	1 cut(s)	157
HpyAV	CCTTC	8 cut(s)	82, 142, 247, 280, 304, 329, 353, 392
HpyCH4V	TGCA	2 cut(s)	224, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 200, 221, 254
HpyF3I	CTNAG	5 cut(s)	66, 114, 243, 249, 366
Hsp92II	CATG	2 cut(s)	148, 325
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	362
LpnPI	CCDG	6 cut(s)	75, 135, 139, 142, 204, 314
Lsp1109I	GCAGC	2 cut(s)	202, 359
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	4 cut(s)	127, 161, 368, 407
MflI	RGATCY	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	8 cut(s)	111, 238, 276, 346, 361, 376, 403, 406
Mox20I	TGGCCA	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	203, 350
MspI	CCGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	118, 200, 221, 254
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	1 cut(s)	362
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	148, 325
NlaIV	GGNNCC	2 cut(s)	102, 258
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	94, 217, 349
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PpuMI	RGGWCCY	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	102, 258
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	362
RigI	GGCCGGCC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	3 cut(s)	93, 216, 348
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	29
SetI	ASST	6 cut(s)	45, 72, 217, 262, 291, 372
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	100
SsiI	CCGC	3 cut(s)	92, 201, 350
SspMI	CTAG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	96
TauI	GCSGC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	2 cut(s)	133, 349
TseI	GCWGC	2 cut(s)	215, 347
TspDTI	ATGAA	5 cut(s)	17, 133, 323, 338, 408
TspRI	CASTG	2 cut(s)	133, 349
VpaK11BI	GGWCC	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.