Rh4AG440100

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
73132495 .. 73132752
258 bp
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UTR
Exon/CDS
Intron
Rh4AG440100.1

Sequence Viewer

Length: 258 bp
ATGGCTCTTTGTTTCTTTGGCACCGGTCGACACAGCAAAGTCTTCGACCCATTTTCCCTTAACATCTGGGAGCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTTCCGGCGACACCTCTGCCTTGGCCCATACCCGAATCGACTGGAAGGAGACCCCGGATGCCCATATCTTCAAGGCGGACTTCCCCGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTATGGGTTTCATAAACCCAGATGA
Functional Annotation

Protein Analysis

85

Amino Acids

9.63

Weight (kDa)

6.39

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 80
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 2 cut(s) 161, 192
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 34
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 104, 138
BcnI CCSGG 2 cut(s) 161, 192
BcoDI GTCTC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 161, 192
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 22, 72
BmrFI CCNGG 2 cut(s) 161, 192
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 161, 192
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 126, 159, 190
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 126, 159, 190
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 88, 91
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 4 cut(s) 24, 111, 161, 192
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 75
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 22, 72
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 126, 159, 190
BssT1I CCWWGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 149
BstMCI CGRYCG 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 159, 190
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 23
CviJI RGCY 5 cut(s) 5, 73, 84, 131, 223
CviKI_1 RGCY 5 cut(s) 5, 73, 84, 131, 223
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 126
FaiI YATR 5 cut(s) 80, 135, 171, 237, 246
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 131
HapII CCGG 4 cut(s) 24, 111, 161, 192
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 1 cut(s) 141
HpaII CCGG 4 cut(s) 24, 111, 161, 192
Hpy166II GTNNAC 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 85, 145, 196, 208
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 37, 52, 124, 133, 174, 205, 209
LweI GCATC 1 cut(s) 154
MboII GAAGA 4 cut(s) 34, 166, 211, 218
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 232
MnlI CCTC 3 cut(s) 109, 112, 130
MseI TTAA 1 cut(s) 60
MspI CCGG 4 cut(s) 24, 111, 161, 192
MspR9I CCNGG 2 cut(s) 161, 192
NciI CCSGG 2 cut(s) 161, 192
NlaIV GGNNCC 2 cut(s) 22, 72
PfeI GAWTC 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 22, 72
PspPI GGNCC 1 cut(s) 130
SalI GTCGAC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 161, 192
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 122, 219, 225
SfaNI GCATC 1 cut(s) 154
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 159, 190
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 3 cut(s) 28, 45, 144
TasI AATT 1 cut(s) 232
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TspDTI ATGAA 3 cut(s) 67, 233, 245
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.