Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Reverse (-)

64659439 .. 64659816

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG447600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCATCCTAATCGATCAAAACCTCCACTTTTCCTCCATTATCAGAATCATCCAAAGCAACCAAGTCTTCCAATACCTACCTACACCAGCAAATCGAAGACCTTAGCAAGCCCATCAACAATGGCTCTTTGTTTCTTTGGCACCGGTCGACACAGCAAAGTCTTCGACCCATTTTCCCTTGACATCTGGGAGCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTGCCGGCGACACCTCTGCCTTGGCCCATACCCGAATCGACTGGAAGGAGACCCCGGATGCCCATATCTTCAAGGTGGACTTCCCCGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTATGGGTTTCATAAACCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

125

Amino Acids

14.15

Weight (kDa)

9.07

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	249
AsiGI	ACCGGT	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	2 cut(s)	281, 312
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	3 cut(s)	59, 104, 154
BccI	CCATC	1 cut(s)	121
BcgI	CGANNNNNNTGC	5 cut(s)	27, 145, 179, 224, 258
BcnI	CCSGG	2 cut(s)	281, 312
BcoDI	GTCTC	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	281, 312
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	142, 192
BmrFI	CCNGG	2 cut(s)	281, 312
BmsI	GCATC	2 cut(s)	13, 274
BpiI	GAAGAC	3 cut(s)	59, 104, 154
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	103
BpuMI	CCSGG	2 cut(s)	281, 312
Bsa29I	ATCGAT	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	246, 279, 310
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	2 cut(s)	143, 230
Bse1I	ACTGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	246, 279, 310
BseGI	GGATG	3 cut(s)	4, 49, 289
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	208, 211
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	140
BshTI	ACCGGT	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	144, 231, 281, 312
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	142, 192
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	143, 230
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	2 cut(s)	143, 230
BssECI	CCNNGG	3 cut(s)	246, 279, 310
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	109, 232
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	4, 49, 289
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	279, 310
BstV2I	GAAGAC	3 cut(s)	59, 104, 154
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	4, 49, 289
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	109, 232
Cfr10I	RCCGGY	2 cut(s)	143, 230
Cfr13I	GGNCC	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	143
CviJI	RGCY	6 cut(s)	111, 125, 193, 204, 251, 343
CviKI_1	RGCY	6 cut(s)	111, 125, 193, 204, 251, 343
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	246
FaiI	YATR	5 cut(s)	200, 255, 291, 357, 366
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FblI	GTMKAC	1 cut(s)	148
FokI	GGATG	2 cut(s)	36, 296
FriOI	GRGCYC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	4 cut(s)	144, 231, 281, 312
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	46, 261
HpaII	CCGG	4 cut(s)	144, 231, 281, 312
Hpy166II	GTNNAC	2 cut(s)	149, 304
Hpy188I	TCNGA	1 cut(s)	45
Hpy8I	GTNNAC	2 cut(s)	149, 304
HpyAV	CCTTC	4 cut(s)	205, 265, 316, 328
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	100, 157, 172, 244, 253, 294, 325, 329
LweI	GCATC	2 cut(s)	13, 274
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	6 cut(s)	59, 109, 154, 286, 331, 338
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	352
MnlI	CCTC	5 cut(s)	33, 44, 229, 232, 250
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	230
MspI	CCGG	4 cut(s)	144, 231, 281, 312
MspR9I	CCNGG	2 cut(s)	281, 312
NaeI	GCCGGC	1 cut(s)	232
NciI	CCSGG	2 cut(s)	281, 312
NdeII	GATC	1 cut(s)	14
NgoMIV	GCCGGC	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	142, 192
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	46, 261
PinAI	ACCGGT	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	142, 192
PspPI	GGNCC	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	281, 312
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	8 cut(s)	25, 79, 83, 104, 242, 303, 339, 345
SfaNI	GCATC	2 cut(s)	13, 274
Sse9I	AATT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	279, 310
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	5 cut(s)	13, 95, 148, 165, 264
TasI	AATT	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	46, 261
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	187, 353, 365
TspRI	CASTG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.