Rh7DG008800

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003719
Physical Location & Seq
Forward (+)
733089 .. 733346
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG008800.1

Sequence Viewer

Length: 258 bp
ATGGCTCTTTGTTTCTTTGGCACCGGCCGACACAGCAACGTCTTCGACCCATTTTCCCTCGACATCTGGGAGCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTTCCGGTGACACCTTTGCCTTGGCCCATACCAAAATCGACTGGAAGGAGACCCTGGATGCCCATATCTTCAAGGCGGACCTCCCCGAACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTCTGGGTTTAATAAACCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

85

Amino Acids

9.6

Weight (kDa)

5.21

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 2 cut(s) 25, 129
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 130, 184
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 130, 184
BmiI GGNNCC 2 cut(s) 22, 72
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 126, 159
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 126, 159
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 88, 91
BseX3I CGGCCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 27, 131
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 2 cut(s) 24, 111
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 2 cut(s) 27, 131
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 75
BspACI CCGC 1 cut(s) 182
BspANI GGCC 2 cut(s) 27, 131
BspLI GGNNCC 2 cut(s) 22, 72
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 126, 159
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 149
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 34
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 27, 131
BtsCI GGATG 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 130, 184
CviJI RGCY 6 cut(s) 5, 27, 73, 84, 131, 223
CviKI_1 RGCY 6 cut(s) 5, 27, 73, 84, 131, 223
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 126
FaiI YATR 3 cut(s) 80, 135, 171
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 2 cut(s) 27, 131
HapII CCGG 2 cut(s) 24, 111
HpaII CCGG 2 cut(s) 24, 111
HphI GGTGA 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 85, 145, 196, 208
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 39
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 8 cut(s) 37, 52, 124, 133, 146, 173, 209, 222
LweI GCATC 1 cut(s) 154
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 4 cut(s) 34, 166, 211, 218
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 232
MnlI CCTC 4 cut(s) 68, 109, 112, 197
MseI TTAA 1 cut(s) 243
MspI CCGG 2 cut(s) 24, 111
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 22, 72
NmuCI GTSAC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 22, 72
PspPI GGNCC 2 cut(s) 130, 184
SaqAI TTAA 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 130, 184
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 75
SetI ASST 5 cut(s) 42, 122, 189, 219, 225
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 1 cut(s) 184
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 45, 60, 144
TasI AATT 1 cut(s) 232
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 67, 245
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.