Rh4BG218600

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003719
Physical Location & Seq
Reverse (-)
37884653 .. 37885296
644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG218600.1

Sequence Viewer

Length: 378 bp
ATGCATCCTAATCAATCAAAACCTCCACTTTTCCTCCATTATCAGAATCATCCAAAGCAACCAAGTCTTCCAATACCTACCTACACTAGCAAATCGAAGACCTTAGCAAGCCCATCAACAATGGCTCTTTGTTTCTTTGGCACAGGCCGACACAGCAACGTCTTCGACCCATTTTCCCTCTACATCTGGGAGCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTGACGGCGACACCTCCGCCTTGGCCCATACCCGAATCGACTGGAAGGAGACCTCGGATGCCCATATCTTCAAGGCGGACCTCCCCGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTCTGGGTTTAATAAACCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

125

Amino Acids

14.0

Weight (kDa)

7.9

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 243, 302
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 2 cut(s) 145, 249
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 250, 304
AsuC2I CCSGG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 3 cut(s) 59, 104, 154
BccI CCATC 1 cut(s) 121
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 2 cut(s) 250, 304
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 13, 274
BpiI GAAGAC 3 cut(s) 59, 104, 154
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 246, 279, 310
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 206, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 246, 279, 310
BseGI GGATG 3 cut(s) 4, 49, 289
BseLI CCNNNNNNNGG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 208, 211
BshFI GGCC 2 cut(s) 147, 251
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 2 cut(s) 147, 251
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 195
BspACI CCGC 2 cut(s) 243, 302
BspANI GGCC 2 cut(s) 147, 251
BspLI GGNNCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 246, 279, 310
BssT1I CCWWGG 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 3 cut(s) 4, 49, 289
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 310
BstV2I GAAGAC 3 cut(s) 59, 104, 154
BsuRI GGCC 2 cut(s) 147, 251
BtsCI GGATG 3 cut(s) 4, 49, 289
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 250, 304
CviJI RGCY 7 cut(s) 111, 125, 147, 193, 204, 251, 343
CviKI_1 RGCY 7 cut(s) 111, 125, 147, 193, 204, 251, 343
DdeI CTNAG 1 cut(s) 103
EciI GGCGGA 2 cut(s) 232, 317
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 246
FaiI YATR 3 cut(s) 200, 255, 291
FokI GGATG 2 cut(s) 36, 296
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 2 cut(s) 147, 251
HapII CCGG 1 cut(s) 312
HinfI GANTC 2 cut(s) 46, 261
HpaII CCGG 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 45, 283
HpyAV CCTTC 4 cut(s) 205, 265, 316, 328
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 159
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 129, 172, 253, 325, 329, 342
LweI GCATC 2 cut(s) 13, 274
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 159
MboII GAAGA 6 cut(s) 59, 109, 154, 286, 331, 338
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 1 cut(s) 352
MnlI CCTC 8 cut(s) 33, 44, 188, 229, 232, 250, 289, 317
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 363
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 312
NlaIV GGNNCC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 46, 261
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 250, 304
SaqAI TTAA 1 cut(s) 363
Sau96I GGNCC 2 cut(s) 250, 304
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 2 cut(s) 13, 274
SinI GGWCC 1 cut(s) 304
Sse9I AATT 1 cut(s) 352
SsiI CCGC 2 cut(s) 243, 302
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 95, 165, 264
TasI AATT 1 cut(s) 352
TfiI GAWTC 2 cut(s) 46, 261
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 187, 365
TspRI CASTG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 352
XspI CTAG 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.