Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Forward (+)

40556563 .. 40556940

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG210300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCATCCTAATCGATCAAAACCTCCACTTTTCCTCCATTATCAAAATCATCCAAAGCAACCAAGTCTTCCAATACCTACATACACTAGCAAATCGAAGACCTTAGCAAGCTCATCAACAATGGCTCTTTGTTTCTTTGGCACCGGCCGACACAGCAATGTCTTCGACCTATTTTCCCTCTACATCTGGGAGCTCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTGACGGCGACACCTCCGCCTTGGCCCATACCCGAATCGACTGGAAGGAGACCCCGGATGCCTATATCTTCAAGGCGGACCTCCCTGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTCTGGGTTTAATAAACCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

125

Amino Acids

14.09

Weight (kDa)

8.69

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	2 cut(s)	243, 302
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	3 cut(s)	111, 193, 343
AluI	AGCT	3 cut(s)	111, 193, 343
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	145, 249
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	250, 304
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	3 cut(s)	59, 104, 154
Bbv12I	GWGCWC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	3 cut(s)	27, 145, 179
BciT130I	CCWGG	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	87
Bme1390I	CCNGG	2 cut(s)	281, 312
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	250, 304
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	281, 312
BmsI	GCATC	2 cut(s)	13, 274
BpiI	GAAGAC	3 cut(s)	59, 104, 154
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	246, 279, 310
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 206, 236
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	312
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	246, 279, 310
BseGI	GGATG	3 cut(s)	4, 49, 289
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	208, 211
BseX3I	CGGCCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	147, 251
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	144, 281
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	147, 251
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	243, 302
BspANI	GGCC	2 cut(s)	147, 251
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	246, 279, 310
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	4, 49, 289
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	279, 310
BstV2I	GAAGAC	3 cut(s)	59, 104, 154
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	147, 251
BsuTUI	ATCGAT	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	4, 49, 289
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	250, 304
ClaI	ATCGAT	1 cut(s)	13
CviJI	RGCY	7 cut(s)	111, 125, 147, 193, 204, 251, 343
CviKI_1	RGCY	7 cut(s)	111, 125, 147, 193, 204, 251, 343
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	2 cut(s)	232, 317
Ecl136II	GAGCTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	304
Eco52I	CGGCCG	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	246
FaiI	YATR	4 cut(s)	82, 200, 255, 291
FokI	GGATG	2 cut(s)	36, 296
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	147, 251
HapII	CCGG	2 cut(s)	144, 281
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	2 cut(s)	144, 281
HpyAV	CCTTC	3 cut(s)	265, 316, 328
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	14
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	157, 172, 253, 294, 297, 324, 329, 342
LweI	GCATC	2 cut(s)	13, 274
MaeI	CTAG	1 cut(s)	87
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	7 cut(s)	59, 109, 154, 187, 286, 331, 338
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	352
MnlI	CCTC	7 cut(s)	33, 44, 188, 229, 232, 250, 317
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	144, 281
MspR9I	CCNGG	2 cut(s)	281, 312
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	250, 304
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	2 cut(s)	250, 304
ScrFI	CCNGG	2 cut(s)	281, 312
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	13, 274
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	243, 302
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	279, 310
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	4 cut(s)	13, 95, 165, 264
TasI	AATT	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	187, 365
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	352
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.