Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Forward (+)

26200161 .. 26201299

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G243800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTCTAAGCCTCTTTGGTGGCCGACGAAGCAACGTCTTCGATCCGTTCTCTCTTGACATCTGGGACCCCTTAGAGGGCCTTGGCACTCTGGCCAACATCCCACCCTCTGCTCGCGAAACGACTGCCATCGCCAACACTCGCATTGACTGGAAAGAAACCCCAGAAGCCCACATCTTCATCGCTGACCTCCCGGGGCTGAAGAAGGAGGAAGTGAAAGTTGAGGTTGATGACGGGAAGGTGCTTCAGATTAGCGGAGAGAGGAGCAGAGAGCAGGAGGAGAAGAACGACAAGTGGCACAGGATTGAGAGGAGCACCGGCAAGTTTTCGAGGAGGTTCAGGTTGCCGGATAATGCGAAAATTGATCAGGTAAAGGCTAGCATGGAGAATGGGGTTCTCACCGTGACTGTGCCCAAGGAGGAGGAGAAGCGGCCACAGGTCAAGGCCATTGACATCTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

155

Amino Acids

17.38

Weight (kDa)

5.81

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AciI	CCGC	2 cut(s)	255, 430
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	3 cut(s)	22, 93, 431
AcuI	CTGAAG	2 cut(s)	221, 230
AfiI	CCNNNNNNNGG	2 cut(s)	76, 77
Alw21I	GWGCWC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	5 cut(s)	22, 79, 93, 431, 444
AspS9I	GGNCC	2 cut(s)	67, 79
AsuC2I	CCSGG	2 cut(s)	194, 195
AsuHPI	GGTGA	1 cut(s)	391
AsuNHI	GCTAGC	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	317
BccI	CCATC	1 cut(s)	137
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 107, 141
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	194, 195
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	194, 195
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	67, 79
BmiI	GGNNCC	2 cut(s)	68, 69
BmrFI	CCNGG	2 cut(s)	194, 195
BmtI	GCTAGC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	194, 195
BsaJI	CCNNGG	4 cut(s)	82, 193, 194, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 77
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	82, 193, 194, 414
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	76, 77
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	6 cut(s)	277, 293, 325, 346, 434, 437
BseSI	GKGCMC	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	24, 81, 95, 433, 446
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	194, 318, 347
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	76, 77
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	5 cut(s)	24, 81, 95, 433, 446
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	317, 414
Bsp143I	GATC	2 cut(s)	43, 364
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	2 cut(s)	255, 430
BspANI	GGCC	5 cut(s)	24, 81, 95, 433, 446
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	68, 69
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	4 cut(s)	82, 193, 194, 414
BssMI	GATC	2 cut(s)	43, 364
BssT1I	CCWWGG	2 cut(s)	82, 414
Bst4CI	ACNGT	2 cut(s)	403, 409
BstC8I	GCNNGC	2 cut(s)	115, 379
BstDEI	CTNAG	2 cut(s)	8, 73
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	46, 367
BstMBI	GATC	2 cut(s)	43, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	192, 193
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	5 cut(s)	24, 81, 95, 433, 446
BtgZI	GCGATG	2 cut(s)	115, 166
BtsCI	GGATG	1 cut(s)	99
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	115, 379
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	67, 79
Cfr9I	CCCGGG	1 cut(s)	193
CviAII	CATG	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	8, 73
DpnI	GATC	2 cut(s)	45, 366
DpnII	GATC	2 cut(s)	43, 364
EaeI	YGGCCR	3 cut(s)	22, 93, 431
Eco130I	CCWWGG	2 cut(s)	82, 414
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	221, 230
Eco88I	CYCGRG	1 cut(s)	193
EcoO109I	RGGNCCY	2 cut(s)	67, 79
EcoT14I	CCWWGG	2 cut(s)	82, 414
ErhI	CCWWGG	2 cut(s)	82, 414
FaeI	CATG	1 cut(s)	385
FaiI	YATR	1 cut(s)	383
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	5 cut(s)	24, 81, 95, 433, 446
HapII	CCGG	3 cut(s)	194, 318, 347
Hin1II	CATG	1 cut(s)	385
HpaII	CCGG	3 cut(s)	194, 318, 347
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	56, 116
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	199, 232
HpyCH4III	ACNGT	2 cut(s)	403, 409
HpyCH4IV	ACGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	8, 73
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	385
KflI	GGGWCCC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	43, 364
LmnI	GCTCC	2 cut(s)	264, 312
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	45, 366
MboI	GATC	2 cut(s)	43, 364
MboII	GAAGA	4 cut(s)	31, 169, 214, 295
MhlI	GDGCHC	2 cut(s)	317, 414
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	1 cut(s)	360
MluNI	TGGCCA	1 cut(s)	95
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	3 cut(s)	194, 318, 347
MspR9I	CCNGG	2 cut(s)	194, 195
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	30
NciI	CCSGG	2 cut(s)	194, 195
NdeII	GATC	2 cut(s)	43, 364
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	68, 69
NmuCI	GTSAC	1 cut(s)	403
NruI	TCGCGA	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	432
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	68, 69
PspPI	GGNCC	2 cut(s)	67, 79
PspPPI	RGGWCCY	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	43, 364
Sau96I	GGNCC	2 cut(s)	67, 79
ScrFI	CCNGG	2 cut(s)	194, 195
SduI	GDGCHC	2 cut(s)	317, 414
SetI	ASST	8 cut(s)	39, 192, 228, 243, 338, 344, 372, 441
SinI	GGWCC	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	2 cut(s)	255, 430
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	192, 193
StyI	CCWWGG	2 cut(s)	82, 414
TaaI	ACNGT	2 cut(s)	403, 409
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	42, 329
TasI	AATT	1 cut(s)	360
TauI	GCSGC	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	36
TspMI	CCCGGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	67
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.