Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8089732.1

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Forward (+)

332 .. 592

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8089732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggctctcagtctctttggcaccggccgacgcagcaacgtcttcgacccattttccctcgacatctgggaccccttccagggcataggctctctcgtcaactcctcctccactgccgccgacacctccgccttcgctcagacccgaatcgactggaaggagaccccggaggcccacatcttcaaggcggacctccccggactgaagaaggaagaagtgaaggttgagctggaggaagggaatgtccttcagatcagcgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

87

Amino Acids

9.51

Weight (kDa)

4.64

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	4 cut(s)	117, 129, 188, 258
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	2 cut(s)	224, 233
AfiI	CCNNNNNNNGG	2 cut(s)	79, 80
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	17, 155
AoxI	GGCC	2 cut(s)	25, 171
ApeKI	GCWGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	70, 172, 190
AsuC2I	CCSGG	2 cut(s)	167, 198
AvaII	GGWCC	2 cut(s)	70, 190
BanI	GGYRCC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	167, 198
BcoDI	GTCTC	2 cut(s)	17, 155
BisI	GCNGC	2 cut(s)	34, 117
BlsI	GCNGC	2 cut(s)	35, 118
Bme1390I	CCNGG	3 cut(s)	80, 167, 198
Bme18I	GGWCC	2 cut(s)	70, 190
BmgT120I	GGNCC	3 cut(s)	70, 172, 190
BmiI	GGNNCC	3 cut(s)	22, 71, 72
BmrFI	CCNGG	3 cut(s)	80, 167, 198
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	167, 198
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	79, 165, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 80
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	79, 165, 196
BseLI	CCNNNNNNNGG	2 cut(s)	79, 80
BseMII	CTCAG	2 cut(s)	22, 152
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	2 cut(s)	94, 97
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	27, 173
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	24, 167, 198
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	79, 80
BsmAI	GTCTC	2 cut(s)	17, 155
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	27, 173
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	4 cut(s)	117, 129, 188, 258
BspANI	GGCC	2 cut(s)	27, 173
BspCNI	CTCAG	2 cut(s)	21, 151
BspLI	GGNNCC	3 cut(s)	22, 71, 72
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	79, 165, 196
BssMI	GATC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	8, 138
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	17, 155
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	78, 165, 196
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	27, 173
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	3 cut(s)	70, 172, 190
CseI	GACGC	1 cut(s)	39
CviJI	RGCY	5 cut(s)	5, 27, 90, 173, 229
CviKI_1	RGCY	5 cut(s)	5, 27, 90, 173, 229
DdeI	CTNAG	2 cut(s)	8, 138
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
EciI	GGCGGA	2 cut(s)	118, 203
EclXI	CGGCCG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	70, 190
Eco52I	CGGCCG	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	224, 233
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	78
FaiI	YATR	1 cut(s)	86
FaqI	GGGAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	34, 117
Fsp4HI	GCNGC	2 cut(s)	34, 117
GluI	GCNGC	2 cut(s)	34, 117
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	27, 173
HapII	CCGG	3 cut(s)	24, 167, 198
HgaI	GACGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	3 cut(s)	24, 167, 198
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	141, 252
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	7 cut(s)	85, 142, 151, 202, 214, 230, 257
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	8, 138
HpySE526I	ACGT	1 cut(s)	39
KflI	GGGWCCC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	252
LpnPI	CCDG	8 cut(s)	37, 52, 65, 92, 139, 180, 211, 215
Lsp1109I	GCAGC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	39
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	34, 172, 217, 224
MnlI	CCTC	7 cut(s)	68, 115, 118, 136, 163, 203, 226
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	24, 167, 198
MspR9I	CCNGG	3 cut(s)	80, 167, 198
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	33
NciI	CCSGG	2 cut(s)	167, 198
NdeII	GATC	1 cut(s)	252
NlaIV	GGNNCC	3 cut(s)	22, 71, 72
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	35, 118
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	22, 71, 72
PspPI	GGNCC	3 cut(s)	70, 172, 190
PspPPI	RGGWCCY	1 cut(s)	70
SatI	GCNGC	2 cut(s)	34, 117
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	3 cut(s)	70, 172, 190
ScrFI	CCNGG	3 cut(s)	80, 167, 198
SetI	ASST	5 cut(s)	42, 128, 195, 225, 231
SinI	GGWCC	2 cut(s)	70, 190
SsiI	CCGC	4 cut(s)	117, 129, 188, 258
StyD4I	CCNGG	3 cut(s)	78, 165, 196
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	45, 60, 150
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	33
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	70, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.