Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Forward (+)

155077 .. 156523

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgcatcccaatcgatcaaaacctccacttttcctccattatcagaatcattcaaagaaaccaagtcttccaatacctacctacactagcaaatcgaagaccttagcaagcccatcaacaacggctctttgtttctttggcaccggccgacacagcaacgtcttcgacccattttccctcgacatctgggagcccttcataggctctctcatcaactcctcctccacttccggcgacacctttgcctcggcccataccagaatcgactggaaggagaccccggatgcccatatcttcaaggcggacctccccgaactgaagaaggaagaagtgaaggttgagttggagatgaattctggagctgaggttgtggaggtgggagaggcagaagtcgcggctgttctgaaaaatgacgacggaggagatggtggtgacgaagtcattgacgaaagagaattgaatgggaagtttggttggctgattttcattttcatggaaatttgtgtggtaagagtacaaacatggagggaatggtggtcatcccctatggaaaatggcgggaaatcaaggtctgatagagtctggggtcatttacgacattttatggcatttttaggtctaggtgcttgccacgtcagatatttgacggatccgttagcaaaatctaacggaagtacctcattgataacaaagtatgggttcaggtatcacattgataccattgagagtgcaggtatcaaattggccggtgcacaagagttgaggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

256

Amino Acids

28.62

Weight (kDa)

6.12

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	140
AccII	CGCG	1 cut(s)	395
AciI	CCGC	3 cut(s)	302, 395, 558
AclWI	GGATC	2 cut(s)	644, 657
AcoI	YGGCCR	2 cut(s)	145, 744
AcsI	RAATTY	2 cut(s)	352, 498
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	516, 676
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	54, 298, 460
AjiI	CACGTC	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	750
AlwI	GGATC	2 cut(s)	644, 657
AoxI	GGCC	3 cut(s)	145, 249, 744
ApaLI	GTGCAC	1 cut(s)	750
ApoI	RAATTY	2 cut(s)	352, 498
AspS9I	GGNCC	2 cut(s)	250, 304
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	754
BaeI	ACNNNNGTAYC	2 cut(s)	658, 691
BamHI	GGATCC	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	3 cut(s)	59, 104, 154
Bbv12I	GWGCWC	1 cut(s)	754
BbvCI	CCTCAGC	1 cut(s)	363
BccI	CCATC	2 cut(s)	121, 419
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	5 cut(s)	27, 145, 179, 224, 258
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	87, 620
BfuAI	ACCTGC	1 cut(s)	722
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	304
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	2 cut(s)	250, 304
BmiI	GGNNCC	3 cut(s)	142, 192, 651
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	13, 274
BpiI	GAAGAC	3 cut(s)	59, 104, 154
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	2 cut(s)	103, 363
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	246, 279
BsaXI	ACNNNNNCTCC	6 cut(s)	18, 48, 206, 236, 351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	2 cut(s)	143, 746
Bse1I	ACTGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	246, 279
BseGI	GGATG	3 cut(s)	4, 289, 539
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	3 cut(s)	208, 211, 435
BseSI	GKGCMC	1 cut(s)	754
BseX3I	CGGCCG	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	395
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	147, 251, 746
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	754
BsiSI	CCGG	4 cut(s)	144, 231, 281, 747
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	147, 251, 746
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	195, 754
Bsp143I	GATC	2 cut(s)	14, 649
BspACI	CCGC	3 cut(s)	302, 395, 558
BspANI	GGCC	3 cut(s)	147, 251, 746
BspCNI	CTCAG	1 cut(s)	355
BspDI	ATCGAT	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	142, 192, 651
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	644, 657
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	143, 746
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	2 cut(s)	143, 746
BssECI	CCNNGG	2 cut(s)	246, 279
BssMI	GATC	2 cut(s)	14, 649
BstC8I	GCNNGC	2 cut(s)	109, 628
BstDEI	CTNAG	2 cut(s)	103, 363
BstF5I	GGATG	3 cut(s)	4, 289, 539
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	17, 652
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	14, 649
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 392
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	754
BstUI	CGCG	1 cut(s)	395
BstV2I	GAAGAC	3 cut(s)	59, 104, 154
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	3 cut(s)	147, 251, 746
BsuTUI	ATCGAT	1 cut(s)	13
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	4, 289, 539
BtsIMutI	CAGTG	1 cut(s)	766
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	109, 628
Cfr10I	RCCGGY	2 cut(s)	143, 746
Cfr13I	GGNCC	2 cut(s)	250, 304
ClaI	ATCGAT	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	515, 675
CviAII	CATG	2 cut(s)	493, 522
CviQI	GTAC	2 cut(s)	515, 675
DdeI	CTNAG	2 cut(s)	103, 363
DpnI	GATC	2 cut(s)	16, 651
DpnII	GATC	2 cut(s)	14, 649
EaeI	YGGCCR	2 cut(s)	145, 744
EagI	CGGCCG	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	317
EclXI	CGGCCG	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	304
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	2 cut(s)	496, 525
FaiI	YATR	8 cut(s)	200, 255, 291, 494, 523, 548, 605, 696
FatI	CATG	2 cut(s)	492, 521
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	296, 526
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	87, 620
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	147, 251, 746
HapII	CCGG	4 cut(s)	144, 231, 281, 747
Hin1II	CATG	2 cut(s)	496, 525
HinfI	GANTC	3 cut(s)	46, 261, 579
HpaII	CCGG	4 cut(s)	144, 231, 281, 747
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	752
Hpy188I	TCNGA	4 cut(s)	45, 405, 574, 638
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	1 cut(s)	752
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	4 cut(s)	205, 265, 316, 328
HpyCH4IV	ACGT	2 cut(s)	159, 633
HpyCH4V	TGCA	3 cut(s)	4, 731, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 392
HpyF3I	CTNAG	2 cut(s)	103, 363
HpySE526I	ACGT	2 cut(s)	159, 633
Hsp92II	CATG	2 cut(s)	496, 525
Kzo9I	GATC	2 cut(s)	14, 649
LmnI	GCTCC	2 cut(s)	190, 359
LweI	GCATC	2 cut(s)	13, 274
MaeI	CTAG	2 cut(s)	87, 620
MaeII	ACGT	2 cut(s)	159, 633
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	2 cut(s)	16, 651
MboI	GATC	2 cut(s)	14, 649
MboII	GAAGA	6 cut(s)	59, 109, 154, 286, 331, 338
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	195, 754
MluCI	AATT	4 cut(s)	352, 455, 498, 740
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	4 cut(s)	144, 231, 281, 747
MspR9I	CCNGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	153, 392
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	14, 649
NlaIII	CATG	2 cut(s)	496, 525
NlaIV	GGNNCC	3 cut(s)	142, 192, 651
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	431
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	46, 261
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
PspN4I	GGNNCC	3 cut(s)	142, 192, 651
PspPI	GGNCC	2 cut(s)	250, 304
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	2 cut(s)	516, 676
RsaNI	GTAC	2 cut(s)	515, 675
RseI	CAYNNNNRTG	1 cut(s)	491
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	14, 649
Sau96I	GGNCC	2 cut(s)	250, 304
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	195, 754
SfaNI	GCATC	2 cut(s)	13, 274
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	352, 455, 498, 740
SsiI	CCGC	3 cut(s)	302, 395, 558
SspMI	CTAG	2 cut(s)	87, 620
StyD4I	CCNGG	1 cut(s)	279
TaiI	ACGT	2 cut(s)	162, 636
TaqI	TCGA	5 cut(s)	13, 95, 165, 180, 264
TasI	AATT	4 cut(s)	352, 455, 498, 740
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	46, 261
TseFI	GTSAC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	4 cut(s)	187, 365, 475, 481
TspGWI	ACGGA	4 cut(s)	432, 642, 662, 684
Tth111I	GACNNNGTC	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	2 cut(s)	352, 498
XspI	CTAG	2 cut(s)	87, 620
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.