RchiOBHm_Chr4g0447191

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003719
Physical Location & Seq
Reverse (-)
67013310 .. 67013567
258 bp
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UTR
Exon/CDS
Intron
PRQ41466

Sequence Viewer

Length: 258 bp
ATGGCTCTTTGTTTCTTTGGCACCGGTCGACACAGCAAAGTCTTCGACCCATTTTCCCTTGACATCTGGGAGCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTGCCGGCGACACCTCTGCCTTGGCCCATACCCGAATCGACTGGAAGGAGACCCCGGATGCCCATATCTTCAAGGTGGACTTCCCCGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTATGGGTTTCATAAACCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

6.03

Isoelectric Point (pI)

21.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 80
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 2 cut(s) 161, 192
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 34
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 104, 138
BcnI CCSGG 2 cut(s) 161, 192
BcoDI GTCTC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 161, 192
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 22, 72
BmrFI CCNGG 2 cut(s) 161, 192
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 161, 192
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 126, 159, 190
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 2 cut(s) 23, 110
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 126, 159, 190
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 88, 91
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 4 cut(s) 24, 111, 161, 192
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 75
BspANI GGCC 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 22, 72
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 23, 110
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 2 cut(s) 23, 110
BssECI CCNNGG 3 cut(s) 126, 159, 190
BssT1I CCWWGG 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 149
BstMCI CGRYCG 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 159, 190
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 23, 110
Cfr13I GGNCC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 23
CviJI RGCY 5 cut(s) 5, 73, 84, 131, 223
CviKI_1 RGCY 5 cut(s) 5, 73, 84, 131, 223
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 126
FaiI YATR 5 cut(s) 80, 135, 171, 237, 246
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 131
HapII CCGG 4 cut(s) 24, 111, 161, 192
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 1 cut(s) 141
HpaII CCGG 4 cut(s) 24, 111, 161, 192
Hpy166II GTNNAC 2 cut(s) 29, 184
Hpy8I GTNNAC 2 cut(s) 29, 184
HpyAV CCTTC 4 cut(s) 85, 145, 196, 208
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 37, 52, 124, 133, 174, 205, 209
LweI GCATC 1 cut(s) 154
MboII GAAGA 4 cut(s) 34, 166, 211, 218
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 232
MnlI CCTC 3 cut(s) 109, 112, 130
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 4 cut(s) 24, 111, 161, 192
MspR9I CCNGG 2 cut(s) 161, 192
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 161, 192
NgoMIV GCCGGC 1 cut(s) 110
NlaIV GGNNCC 2 cut(s) 22, 72
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 22, 72
PspPI GGNCC 1 cut(s) 130
SalI GTCGAC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 161, 192
SduI GDGCHC 1 cut(s) 75
SetI ASST 4 cut(s) 122, 183, 219, 225
SfaNI GCATC 1 cut(s) 154
Sse9I AATT 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 159, 190
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 3 cut(s) 28, 45, 144
TasI AATT 1 cut(s) 232
TfiI GAWTC 1 cut(s) 141
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 67, 233, 245
TspRI CASTG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.