Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Reverse (-)

41001378 .. 41003201

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATCCTAATCGATCAAAACCTCCACTTTTCCTCCATTATCAGAATCATCCAAAGCAACCAAGTCTTCCAATACCTACCTACACCAGCAAATCGAAGACCTTAGCAAGCCCATCAACAATGGCTCTTTGTTTCTCTGGCACCGGCCGACACATCAACGTCTTCGACCCATTTTCCCTCAACATCTGGGAGCCCTTCATAGGCTCTCTCATCAACTCCTCCAATGCTGGCAACACCTCCGCCTTGGCCCATACCCGAATCGACTGGAAGGAGACCTCGGATGCCCATATCTTCAAGGCGGACCTCCCCGGACTGAAGAAGGAAGAAGTGAAGGTTGAGCTGGAGATGAATTCTGGATTTAATAAACCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

124

Amino Acids

13.86

Weight (kDa)

9.37

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	2 cut(s)	240, 299
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	145, 246
ApoI	RAATTY	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	247, 301
AsuC2I	CCSGG	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	3 cut(s)	59, 104, 154
BccI	CCATC	1 cut(s)	121
BcgI	CGANNNNNNTGC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	247, 301
BmiI	GGNNCC	2 cut(s)	142, 192
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	13, 271
BpiI	GAAGAC	3 cut(s)	59, 104, 154
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	243, 276, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	243, 276, 307
BseGI	GGATG	3 cut(s)	4, 49, 286
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	208
BseX3I	CGGCCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	147, 248
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	144, 309
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	147, 248
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	2 cut(s)	240, 299
BspANI	GGCC	2 cut(s)	147, 248
BspDI	ATCGAT	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	142, 192
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	243, 276, 307
BssMI	GATC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	109, 229
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	4, 49, 286
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	307
BstV2I	GAAGAC	3 cut(s)	59, 104, 154
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	147, 248
BsuTUI	ATCGAT	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	4, 49, 286
Cac8I	GCNNGC	2 cut(s)	109, 229
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	247, 301
ClaI	ATCGAT	1 cut(s)	13
CviJI	RGCY	7 cut(s)	111, 125, 147, 193, 204, 248, 340
CviKI_1	RGCY	7 cut(s)	111, 125, 147, 193, 204, 248, 340
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
EciI	GGCGGA	2 cut(s)	229, 314
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	301
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	243
FaiI	YATR	3 cut(s)	200, 252, 288
FokI	GGATG	2 cut(s)	36, 293
FriOI	GRGCYC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	147, 248
HapII	CCGG	2 cut(s)	144, 309
HinfI	GANTC	2 cut(s)	46, 258
HpaII	CCGG	2 cut(s)	144, 309
Hpy188I	TCNGA	2 cut(s)	45, 280
Hpy188III	TCNNGA	1 cut(s)	354
HpyAV	CCTTC	4 cut(s)	205, 262, 313, 325
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	9 cut(s)	100, 123, 157, 172, 213, 250, 322, 326, 339
LweI	GCATC	2 cut(s)	13, 271
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	6 cut(s)	59, 109, 154, 283, 328, 335
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	349
MnlI	CCTC	7 cut(s)	33, 44, 188, 229, 247, 286, 314
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	360
MspI	CCGG	2 cut(s)	144, 309
MspR9I	CCNGG	1 cut(s)	309
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	142, 192
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	46, 258
PspN4I	GGNNCC	2 cut(s)	142, 192
PspPI	GGNCC	2 cut(s)	247, 301
SaqAI	TTAA	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	2 cut(s)	247, 301
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	13, 271
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	240, 299
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	4 cut(s)	13, 95, 165, 261
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	46, 258
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	187, 362
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	349
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.