Rh6BG387100

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003719
Physical Location & Seq
Reverse (-)
61503110 .. 61503367
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG387100.1

Sequence Viewer

Length: 258 bp
ATGGCTCTTTGTTTCTTTGGCACCGGCCGACACAGCAACGTCTTCGACCCATTTTCCCTCGACATCTGGGACCCCTTCATAGGCTCTCTCATCAACTCCTCCTCCACTGCCGGCGACACCTCCACCTTCGCCCATACCCGAATCGACTGGAAGGAGACCCCGGATGCCCATATCTTCAAGGCGGACCTCCCCGGACTGAAGGAGGAAGAAGTGAAGATTGAGCTAGAGATGAATTCTGGGTTTAATGAACCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

85

Amino Acids

9.53

Weight (kDa)

4.66

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 70, 184
AsuC2I CCSGG 2 cut(s) 161, 192
AvaII GGWCC 2 cut(s) 70, 184
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BcnI CCSGG 2 cut(s) 161, 192
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 161, 192
Bme18I GGWCC 2 cut(s) 70, 184
BmgT120I GGNCC 2 cut(s) 70, 184
BmiI GGNNCC 3 cut(s) 22, 71, 72
BmrFI CCNGG 2 cut(s) 161, 192
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 34
BpuMI CCSGG 2 cut(s) 161, 192
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 159, 190
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 2 cut(s) 23, 110
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 159, 190
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 88, 91
BseX3I CGGCCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 4 cut(s) 24, 111, 161, 192
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 149
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 22, 71, 72
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 23, 110
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 2 cut(s) 23, 110
BssECI CCNNGG 2 cut(s) 159, 190
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 149
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 159, 190
BstV2I GAAGAC 1 cut(s) 34
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 23, 110
Cfr13I GGNCC 2 cut(s) 70, 184
CviJI RGCY 4 cut(s) 5, 27, 84, 223
CviKI_1 RGCY 4 cut(s) 5, 27, 84, 223
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
EciI GGCGGA 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 70, 184
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 232
FaiI YATR 3 cut(s) 80, 135, 171
FaqI GGGAC 1 cut(s) 83
FokI GGATG 1 cut(s) 176
FspBI CTAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 27
HapII CCGG 4 cut(s) 24, 111, 161, 192
HinfI GANTC 1 cut(s) 141
HpaII CCGG 4 cut(s) 24, 111, 161, 192
HpyAV CCTTC 4 cut(s) 85, 136, 145, 193
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 39
KflI GGGWCCC 1 cut(s) 70
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
LpnPI CCDG 7 cut(s) 37, 52, 124, 133, 174, 205, 222
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 39
MboII GAAGA 4 cut(s) 34, 166, 218, 226
MluCI AATT 1 cut(s) 232
MnlI CCTC 6 cut(s) 68, 109, 112, 130, 196, 197
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 1 cut(s) 243
MspI CCGG 4 cut(s) 24, 111, 161, 192
MspR9I CCNGG 2 cut(s) 161, 192
MwoI GCNNNNNNNGC 1 cut(s) 33
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 161, 192
NgoMIV GCCGGC 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 22, 71, 72
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 22, 71, 72
PspPI GGNCC 2 cut(s) 70, 184
PspPPI RGGWCCY 1 cut(s) 70
SaqAI TTAA 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 70, 184
ScrFI CCNGG 2 cut(s) 161, 192
SetI ASST 5 cut(s) 42, 122, 128, 189, 225
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 2 cut(s) 70, 184
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 159, 190
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 45, 60, 144
TasI AATT 1 cut(s) 232
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 67, 245
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 70, 184
XapI RAATTY 1 cut(s) 232
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.