Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003719

Physical Location & Seq

Genomic Coordinates Forward (+)

24062323 .. 24063300

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCTCTCATTCCAAGCATTTTTGGAGGACGCAGATCAAACGTCTTTGATCCGTTCTCGCAAGACTTATGGGATCCATTCGAAGGATTCTTCACGCCATCTTCTGCGTTGGCAAACGCTTCAACCGCTCGTGATGTGGCAGCGTTTACAAACGCAAGAGTGGATTGGAAGGAAACGCCGGAGGCACATGTGTTCAAAGCGGACTTGCCAGGCCTGAAGAAGGAAGAAGTCAAGGTTGAGGTTGAAGACAAGAACGTTCTGCAGATTAGCGGAGAGAGGAGCAAGGAGAACGAAGAGAAGAACGATAAGTGGCACCGTGTGGAGAGAGCTAGTGGGAAGTTTATGAGAAGGTTTAGGTTACCGGAGAATGCAAAGATGGAAGAAGTGAAGGCAACAATGGAGAATGGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCTGAGAAGAAGCCTCAAGTCAAGTCCATCGATATCTCCGGGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0010035 GO:0010286 GO:0042221 GO:0042493 GO:0042542 GO:0046677 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

161

Amino Acids

18.13

Weight (kDa)

6.77

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	55 - 158	1.6e-32	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53540 AT3G46230 AT5G59720
fragaria_vesca	FvH4_7g23710 FvH4_7g23710 FvH4_7g23710 FvH4_7g23710
malus_domestica	MD01G1144400.v1.1 MD07G1210400.v1.1 MD07G1210700.v1.1
prunus_persica	Prupe.2G243800_v2.0.a1
pyrus_communis	pycom01g16380 pycom07g19420
rosa_chinensis	RchiOBHm_Chr1g0368991 RchiOBHm_Chr4g0447191
rosa_laevigata	RLG00000027166
rosa_multiflora	Rmu_co8089732.1_g000001 Rmu_sc0004199.1_g000023
rosa_roxburghii	Rroxscaffold_4G00288100
rosa_rugosa	Rorug01G0346800 Rorug07G0282400
rosa_samantha	Rh1AG353700 Rh1BG317200 Rh1DG348100 Rh2AG301700 Rh2DG325800 Rh4AG440100 Rh4BG218600 Rh4DG210300 Rh4DG447600 Rh6BG181000 Rh6BG387100 Rh7DG008800
rosa_wichuraiana	Rw1G031250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	3 cut(s)	126, 200, 270
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	3 cut(s)	44, 68, 81
AcuI	CTGAAG	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	83, 220
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	123, 196, 245
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	44, 68, 81
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	475
AsuII	TTCGAA	1 cut(s)	81
BamHI	GGATCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	312
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	106, 370, 470
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	210, 475
BmiI	GGNNCC	3 cut(s)	75, 314, 426
BmrFI	CCNGG	2 cut(s)	210, 475
BpiI	GAAGAC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 220
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	83, 220
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	312
BshVI	ATCGAT	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	179, 362, 474
BslI	CCNNNNNNNGG	2 cut(s)	83, 220
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	35, 49, 73
BspACI	CCGC	3 cut(s)	126, 200, 270
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	430
BspDI	ATCGAT	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	75, 314, 426
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	3 cut(s)	44, 68, 81
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	3 cut(s)	35, 49, 73
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	317, 418
Bst6I	CTCTTC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	438
BstEII	GGTNACC	1 cut(s)	357
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	3 cut(s)	38, 52, 76
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	35, 49, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	357
BstSCI	CCNGG	2 cut(s)	208, 473
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	465
CfoI	GCGC	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	465
CseI	GACGC	1 cut(s)	39
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	4 cut(s)	213, 329, 448, 479
CviKI_1	RGCY	4 cut(s)	213, 329, 448, 479
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	3 cut(s)	37, 51, 75
DpnII	GATC	3 cut(s)	35, 49, 73
DraIII	CACNNNGTG	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	469
FaeI	CATG	1 cut(s)	191
FaiI	YATR	3 cut(s)	70, 189, 344
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	3 cut(s)	179, 362, 474
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	3 cut(s)	179, 362, 474
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	5 cut(s)	77, 163, 214, 342, 382
HpyCH4III	ACNGT	2 cut(s)	317, 418
HpyCH4IV	ACGT	2 cut(s)	42, 255
HpyCH4V	TGCA	2 cut(s)	262, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	2 cut(s)	42, 255
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	3 cut(s)	35, 49, 73
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	6 cut(s)	192, 195, 222, 227, 375, 450
Lsp1109I	GCAGC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	42, 255
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	3 cut(s)	37, 51, 75
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	3 cut(s)	35, 49, 73
MboII	GAAGA	9 cut(s)	82, 93, 229, 236, 257, 305, 310, 392, 454
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	481
MnlI	CCTC	5 cut(s)	20, 175, 232, 270, 459
MspI	CCGG	3 cut(s)	179, 362, 474
MspR9I	CCNGG	2 cut(s)	210, 475
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	3 cut(s)	35, 49, 73
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	3 cut(s)	75, 314, 426
NspI	RCATGY	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	213
PciI	ACATGT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	208
PspEI	GGTNACC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	75, 314, 426
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	73
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	35, 49, 73
ScrFI	CCNGG	2 cut(s)	210, 475
SetI	ASST	7 cut(s)	45, 237, 243, 258, 331, 353, 359
SfcI	CTRYAG	1 cut(s)	260
SfuI	TTCGAA	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	1 cut(s)	481
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	3 cut(s)	126, 200, 270
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	208, 473
TaaI	ACNGT	2 cut(s)	317, 418
TaiI	ACGT	2 cut(s)	45, 258
TaqI	TCGA	2 cut(s)	81, 465
TasI	AATT	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	87
TseI	GCWGC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	42
XagI	CCTNNNNNAGG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.