MD08G1204300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
26465614 .. 26466150
537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1204300.v1.1.491

Sequence Viewer

Length: 252 bp
ATGTCTCGCCTGAAGAACGACTGCTTGTCTTTCACTGTTTCATTGCAAGAGGGTTTTCGTTATGTTAAGGCATGCTTCGTTGGTCAGGCTAAGAAGTTGACAGCAAGGAATGAGAAGGAAGCAACAGAAGCTGAGCTTCAGACAGCCAAAATGCAAGTTGATGCAGTTGATGCCGCTGAGGATACCAAAAACCAAGTGAGAAGTCAAAATAGGTGTGTGGATAACACTACTCTTACTTTAACTTATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

7.68

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014493)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 250
AciI CCGC 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 32, 122
AhdI GACNNNNNGTC 1 cut(s) 25
AluBI AGCT 2 cut(s) 131, 136
AluI AGCT 2 cut(s) 131, 136
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 177
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 1 cut(s) 174
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 25
BmsI GCATC 2 cut(s) 151, 160
Bpu10I CCTNAGC 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 123, 168
BsmAI GTCTC 1 cut(s) 9
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 124, 169
BsrDI GCAATG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 3 cut(s) 90, 132, 177
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 128, 170
BstNSI RCATGY 1 cut(s) 75
BsuI GTATCC 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 131
CviAII CATG 1 cut(s) 72
CviJI RGCY 4 cut(s) 89, 131, 136, 146
CviKI_1 RGCY 4 cut(s) 89, 131, 136, 146
DdeI CTNAG 3 cut(s) 90, 132, 177
DriI GACNNNNNGTC 1 cut(s) 25
Eam1105I GACNNNNNGTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 32, 122
FaeI CATG 1 cut(s) 75
FaiI YATR 3 cut(s) 63, 73, 250
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 120, 152
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
Hin1II CATG 1 cut(s) 75
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 46, 154, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 170
HpyF3I CTNAG 3 cut(s) 90, 132, 177
Hsp92II CATG 1 cut(s) 75
LpnPI CCDG 2 cut(s) 23, 71
LweI GCATC 2 cut(s) 151, 160
MboII GAAGA 1 cut(s) 25
MnlI CCTC 2 cut(s) 43, 172
MseI TTAA 2 cut(s) 66, 239
MspA1I CMGCKG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 128, 170
NlaIII CATG 1 cut(s) 75
NspI RCATGY 1 cut(s) 75
PaeI GCATGC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 175
PsiI TTATAA 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 131
SaqAI TTAA 2 cut(s) 66, 239
SatI GCNGC 1 cut(s) 174
SetI ASST 3 cut(s) 133, 138, 215
SfaNI GCATC 2 cut(s) 151, 160
SgeI CNNG 9 cut(s) 18, 22, 37, 59, 84, 98, 117, 167, 206
SphI GCATGC 1 cut(s) 75
SsiI CCGC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 37
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 66, 239
Tru9I TTAA 2 cut(s) 66, 239
TscAI CASTG 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 40
XceI RCATGY 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.