MD08G1204900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
26540271 .. 26540875
605 bp
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UTR
Exon/CDS
Intron
MD08G1204900.v1.1.491

Sequence Viewer

Length: 213 bp
ATGTCTCGCCTGAAGAACGACTGCTTGTCTTTCACTGTTTCATTGCAAGAGGGTCTTCGTTATGTTAAGGCATGCTTCGTTGGTCAGGCTAAGAAGTTGACTGCAAGGAATGAGCAGGAAGCAACAGAAGCAGAGCTTCAGACAGCCAAAATGCAAGTTGAAGCAGCTGATGCCGCTGAGGATACCAAAAACAGACTCCACAATTCTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

6.56

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014493)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 32, 122
AgsI TTSAA 1 cut(s) 161
AhdI GACNNNNNGTC 1 cut(s) 25
AluBI AGCT 2 cut(s) 136, 167
AluI AGCT 2 cut(s) 136, 167
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 176
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 2 cut(s) 165, 174
BlsI GCNGC 2 cut(s) 166, 175
BmeRI GACNNNNNGTC 1 cut(s) 25
BmsI GCATC 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 9
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 90, 177
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 128, 170, 173
BstNSI RCATGY 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 47
BsuI GTATCC 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 73
CviAII CATG 1 cut(s) 72
CviJI RGCY 4 cut(s) 89, 136, 146, 167
CviKI_1 RGCY 4 cut(s) 89, 136, 146, 167
DdeI CTNAG 2 cut(s) 90, 177
DriI GACNNNNNGTC 1 cut(s) 25
Eam1105I GACNNNNNGTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 32, 122
FaeI CATG 1 cut(s) 75
FaiI YATR 2 cut(s) 63, 73
FalI AAGNNNNNCTT 6 cut(s) 39, 71, 59, 91, 120, 152
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 165, 174
Fsp4HI GCNGC 2 cut(s) 165, 174
GluI GCNGC 2 cut(s) 165, 174
Hin1II CATG 1 cut(s) 75
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 3 cut(s) 46, 104, 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 170, 173
HpyF3I CTNAG 2 cut(s) 90, 177
Hsp92II CATG 1 cut(s) 75
LpnPI CCDG 3 cut(s) 23, 71, 101
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 25, 47
MluCI AATT 1 cut(s) 202
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 43, 172
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 2 cut(s) 167, 176
MwoI GCNNNNNNNGC 3 cut(s) 128, 170, 173
NlaIII CATG 1 cut(s) 75
NspI RCATGY 1 cut(s) 75
PaeI GCATGC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 166, 175
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 165, 174
SchI GAGTC 1 cut(s) 189
SetI ASST 2 cut(s) 138, 169
SfaNI GCATC 1 cut(s) 160
SgeI CNNG 9 cut(s) 18, 22, 37, 59, 84, 98, 117, 128, 167
SphI GCATGC 1 cut(s) 75
Sse9I AATT 1 cut(s) 202
SsiI CCGC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 37
TasI AATT 1 cut(s) 202
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 40
XceI RCATGY 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.