Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007248

Physical Location & Seq

Genomic Coordinates Forward (+)

16177872 .. 16180415

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38695.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGTGTCGCCGGCGTCCACCGTTTTAGTCTTCCTCTCCCGCCGAAGTGTTCTCTCCGTACTTTTAGCGTCCTCGCCAATGGCAAGCGCACTCAATCTCTGCTACCACATCACTTCTCCGTATTCAACCAAAGTCACCGACTTGTTACCTCCTTGAGTCACAATGTTTCCAACAAATCTGATGCAGAGGCAGAGCGTTCCTGTGATGAAGGAGAAATGTTGGATAAGAATAGGATAAGCAAGAAAAACCCGTTTGTTTCGGAAGAGCTTCTCAAGAAGTTGAAGAGATATGGACTCTCTGGAATATTATCCTATGGGTTACTTAATACAGTCTATTACTCCACAGCTTTCCTCTTGGTCTGGTTTTATGTGGCTCCAGCACCGGGAAAAATGGGTTATCTTGCTGCGGCTGAGAGATTTCTTAAAGTGATGGCCATGGTCTGGGCTGGAAGCCAAGTTACTAAGCTCATCAGAATCGGAGGGGCAGTCGCACTTGCACCTATTGTTGATAGAGGATTGTCGTGGTTTACAGTAAAATGCAACTTTGAAAGTCAGGGAAAAGCTTTTGGCGCACTGGTTGGGATATGTCTTGGTATGGCTTTGATGCTATTTATCGTTGTGACACTGCTTTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.35

Weight (kDa)

9.78

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38695 AT2G38695 AT2G38695 AT2G38695
fragaria_vesca	FvH4_6g11251
malus_domestica	MD02G1270600.v1.1
prunus_persica	Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1
pyrus_communis	pycom02g23150
rosa_chinensis	RchiOBHm_Chr3g0462781
rosa_laevigata	RLG00000024833
rosa_multiflora	Rmu_sc0000766.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417210
rosa_rugosa	Rorug03G0059200
rosa_samantha	Rh3AG117200 Rh3BG121000 Rh3CG123900 Rh3DG122600
rosa_wichuraiana	Rw3G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AciI	CCGC	2 cut(s)	41, 407
AcoI	YGGCCR	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	383, 441
AgsI	TTSAA	3 cut(s)	127, 283, 548
AluBI	AGCT	4 cut(s)	268, 347, 466, 563
AluI	AGCT	4 cut(s)	268, 347, 466, 563
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	90, 572
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	442, 474
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	405, 408
BlsI	GCNGC	2 cut(s)	406, 409
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	172, 594
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	175, 257
BpuMI	CCSGG	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 441
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	383, 441
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	391
BshFI	GGCC	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	12, 383
BslI	CCNNNNNNNGG	2 cut(s)	383, 441
BsnI	GGCC	1 cut(s)	434
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	2 cut(s)	41, 407
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	435
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	23, 331, 532
Bst6I	CTCTTC	2 cut(s)	258, 278
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	13, 86
BstDEI	CTNAG	2 cut(s)	411, 462
BstDSI	CCRYGG	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	90, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	623
BtsIMutI	CAGTG	2 cut(s)	572, 623
Cac8I	GCNNGC	2 cut(s)	13, 86
CfoI	GCGC	2 cut(s)	90, 572
Cfr10I	RCCGGY	1 cut(s)	11
CseI	GACGC	2 cut(s)	4, 58
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	436
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	411, 462
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	258, 278
EarI	CTCTTC	2 cut(s)	258, 278
Eco130I	CCWWGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	1 cut(s)	439
FaiI	YATR	7 cut(s)	291, 315, 369, 437, 586, 596, 637
FatI	CATG	1 cut(s)	435
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	405, 408
Fsp4HI	GCNGC	2 cut(s)	405, 408
GlaI	GCGC	2 cut(s)	89, 571
GluI	GCNGC	2 cut(s)	405, 408
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	2 cut(s)	12, 383
HgaI	GACGC	2 cut(s)	4, 58
HhaI	GCGC	2 cut(s)	90, 572
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	439
Hin6I	GCGC	2 cut(s)	88, 570
HinP1I	GCGC	2 cut(s)	88, 570
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	3 cut(s)	157, 294, 474
HpaII	CCGG	2 cut(s)	12, 383
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	19, 528
Hpy188I	TCNGA	4 cut(s)	181, 262, 473, 479
Hpy188III	TCNNGA	2 cut(s)	274, 300
Hpy8I	GTNNAC	2 cut(s)	19, 528
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	23, 331, 532
HpyCH4V	TGCA	3 cut(s)	185, 497, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	2 cut(s)	411, 462
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	439
HspAI	GCGC	2 cut(s)	88, 570
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	172, 594
MaeIII	GTNAC	6 cut(s)	134, 145, 158, 318, 457, 619
MboII	GAAGA	3 cut(s)	23, 275, 295
MlsI	TGGCCA	1 cut(s)	434
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	166, 288
MmeI	TCCRAC	2 cut(s)	195, 201
MnlI	CCTC	7 cut(s)	45, 83, 160, 181, 362, 473, 506
Mox20I	TGGCCA	1 cut(s)	434
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	2 cut(s)	324, 423
Msp20I	TGGCCA	1 cut(s)	434
MspI	CCGG	2 cut(s)	12, 383
MspR9I	CCNGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	569
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	435
NgoMIV	GCCGGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	3 cut(s)	134, 158, 619
PciSI	GCTCTTC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	406, 409
PleI	GAGTC	2 cut(s)	165, 288
PpsI	GAGTC	2 cut(s)	165, 288
PspN4I	GGNNCC	1 cut(s)	375
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	324, 423
SatI	GCNGC	2 cut(s)	405, 408
SchI	GAGTC	2 cut(s)	166, 288
ScrFI	CCNGG	1 cut(s)	384
SetI	ASST	6 cut(s)	152, 270, 349, 468, 502, 565
SfaNI	GCATC	2 cut(s)	172, 594
SgrAI	CRCCGGYG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	154, 272
SmoI	CTYRAG	2 cut(s)	154, 272
SsiI	CCGC	2 cut(s)	41, 407
SspI	AATATT	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	23, 331, 532
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	2 cut(s)	324, 423
Tru9I	TTAA	2 cut(s)	324, 423
TscAI	CASTG	2 cut(s)	579, 630
TseFI	GTSAC	3 cut(s)	134, 158, 619
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	3 cut(s)	134, 158, 619
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	47, 109
TspRI	CASTG	2 cut(s)	579, 630
Van91I	CCANNNNNTGG	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.