Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007248

Physical Location & Seq

Genomic Coordinates Forward (+)

32545004 .. 32549182

Gene Structure 4179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1270600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCCACCTTCCTTGGCGCTCACAACTCTCTCCATTCCCCTTCTGCAATTGCATAACACGGGCTGCAATGAGTTCGCGTACTTGAGAAATTCCTGGGTTCCAATTTCATCGCCTAAGCTCACCCAAATTTCTCTGAATCAGAAGAACCGGTTTCGACATTTCTCGTCAGCCAATGGCAACAACAATGATTGTGGTTTGTCGGGTGCTGACAGCTTCTCTGCTGAATCTGAAGGTTCAGTTGGAAAGAGTGATAGTGGACAAGGAGTACCTTTCACATCCAACGAGATTTTGAAGAAATTGAGGAGATACGGAATTTCTGGGTTTTTGTCATATGGGCTATTGAATACTGCTTACTATCTTACGACATTTCTCTTGGTATGGTTCTATGTTGCTCCAGCACCGGGGAGGATGGGTTACCTCGCAGCTGTTAAGAGATTCCTTAAAGTAATGGCCATGGTGTGGGCTGGAAGCCAGGTTACAAAGCTTGTACGAGCTGGAGGGGCCCTTGCTCTTGCTCCTTTTGTGGACAAGGGACTGTCATGGTTCACGGTCAAGTTCCATTTCAAGTCTCAGGGCAAGGCTTTCGCGGCGATTGTTGGATTTTGCTTTGGACTAGCCCTCGTTTTGTTTTTCGTGGTGACGCTGCTTTGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.77

Weight (kDa)

9.89

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38695 AT2G38695 AT2G38695 AT2G38695
fragaria_vesca	FvH4_6g11251
malus_domestica	MD02G1270600.v1.1
prunus_persica	Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1
pyrus_communis	pycom02g23150
rosa_chinensis	RchiOBHm_Chr3g0462781
rosa_laevigata	RLG00000024833
rosa_multiflora	Rmu_sc0000766.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417210
rosa_rugosa	Rorug03G0059200
rosa_samantha	Rh3AG117200 Rh3BG121000 Rh3CG123900 Rh3DG122600
rosa_wichuraiana	Rw3G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AccII	CGCG	2 cut(s)	77, 587
AciI	CCGC	1 cut(s)	587
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	88, 126, 312
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	3 cut(s)	80, 267, 489
AfiI	CCNNNNNNNGG	2 cut(s)	401, 459
AgeI	ACCGGT	1 cut(s)	147
AgsI	TTSAA	3 cut(s)	292, 343, 565
AjnI	CCWGG	2 cut(s)	92, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	5 cut(s)	118, 213, 425, 484, 494
AluI	AGCT	5 cut(s)	118, 213, 425, 484, 494
Alw26I	GTCTC	1 cut(s)	573
AoxI	GGCC	3 cut(s)	450, 501, 651
ApaI	GGGCCC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	63, 422, 643
ApoI	RAATTY	3 cut(s)	88, 126, 312
AsiGI	ACCGGT	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	501, 502, 651
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	112, 649
BaeGI	GKGCMC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
BbvI	GCAGC	3 cut(s)	50, 434, 630
BccI	CCATC	1 cut(s)	403
BcgI	CGANNNNNNTGC	4 cut(s)	55, 89, 565, 599
BciT130I	CCWGG	2 cut(s)	94, 473
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	4 cut(s)	64, 423, 588, 644
BlsI	GCNGC	4 cut(s)	65, 424, 589, 645
Bme1390I	CCNGG	3 cut(s)	94, 402, 473
BmgT120I	GGNCC	3 cut(s)	501, 502, 651
BmiI	GGNNCC	3 cut(s)	99, 502, 503
BmrFI	CCNGG	3 cut(s)	94, 402, 473
BpmI	CTGGAG	2 cut(s)	378, 516
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	12, 93, 401, 453
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 459
Bse118I	RCCGGY	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	94, 473
BseDI	CCNNGG	4 cut(s)	12, 93, 401, 453
BseGI	GGATG	2 cut(s)	275, 414
BseLI	CCNNNNNNNGG	2 cut(s)	401, 459
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	584
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	3 cut(s)	50, 434, 630
Bsh1236I	CGCG	2 cut(s)	77, 587
BshFI	GGCC	3 cut(s)	452, 503, 653
BshTI	ACCGGT	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	148, 401
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	401, 459
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	3 cut(s)	452, 503, 653
Bsp120I	GGGCCC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	587
BspANI	GGCC	3 cut(s)	452, 503, 653
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	77, 587
BspLI	GGNNCC	3 cut(s)	99, 502, 503
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	4 cut(s)	12, 93, 401, 453
BssT1I	CCWWGG	2 cut(s)	12, 453
Bst2UI	CCWGG	2 cut(s)	94, 473
Bst4CI	ACNGT	2 cut(s)	537, 550
BstDEI	CTNAG	2 cut(s)	114, 570
BstDSI	CCRYGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	275, 414
BstFNI	CGCG	2 cut(s)	77, 587
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	573
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 587
BstNI	CCWGG	2 cut(s)	94, 473
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	3 cut(s)	92, 400, 471
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	2 cut(s)	77, 587
BstV1I	GCAGC	3 cut(s)	50, 434, 630
BsuRI	GGCC	3 cut(s)	452, 503, 653
BtgI	CCRYGG	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	275, 414
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	501, 502, 651
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	3 cut(s)	79, 266, 488
CspAI	ACCGGT	1 cut(s)	147
CspCI	CAANNNNNGTGG	3 cut(s)	29, 172, 207
CviAII	CATG	2 cut(s)	454, 540
CviQI	GTAC	3 cut(s)	79, 266, 488
DdeI	CTNAG	2 cut(s)	114, 570
EaeI	YGGCCR	1 cut(s)	450
Eco130I	CCWWGG	2 cut(s)	12, 453
Eco24I	GRGCYC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	413
EcoO109I	RGGNCCY	2 cut(s)	501, 502
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	92, 471
EcoT14I	CCWWGG	2 cut(s)	12, 453
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	2 cut(s)	12, 453
FaeI	CATG	2 cut(s)	457, 543
FaiI	YATR	7 cut(s)	54, 331, 333, 379, 387, 455, 541
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	2 cut(s)	453, 539
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	64, 423, 588, 644
FokI	GGATG	2 cut(s)	262, 421
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	64, 423, 588, 644
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	4 cut(s)	64, 423, 588, 644
GsuI	CTGGAG	2 cut(s)	378, 516
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	452, 503, 653
HapII	CCGG	2 cut(s)	148, 401
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	457, 543
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	136, 224, 435
HpaII	CCGG	2 cut(s)	148, 401
HphI	GGTGA	2 cut(s)	112, 649
Hpy166II	GTNNAC	3 cut(s)	257, 526, 546
Hpy188I	TCNGA	3 cut(s)	135, 141, 229
Hpy8I	GTNNAC	3 cut(s)	257, 526, 546
HpyAV	CCTTC	3 cut(s)	18, 50, 224
HpyCH4III	ACNGT	2 cut(s)	537, 550
HpyCH4V	TGCA	3 cut(s)	46, 52, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 587
HpyF3I	CTNAG	2 cut(s)	114, 570
Hsp92II	CATG	2 cut(s)	457, 543
HspAI	GCGC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	397, 520
Lsp1109I	GCAGC	3 cut(s)	50, 434, 630
MaeI	CTAG	1 cut(s)	614
MaeIII	GTNAC	3 cut(s)	413, 475, 637
MboII	GAAGA	2 cut(s)	154, 304
MfeI	CAATTG	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	6 cut(s)	47, 88, 102, 126, 296, 312
MluNI	TGGCCA	1 cut(s)	452
MmeI	TCCRAC	3 cut(s)	220, 303, 577
MnlI	CCTC	5 cut(s)	294, 399, 428, 491, 629
Mox20I	TGGCCA	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	2 cut(s)	429, 441
Msp20I	TGGCCA	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	148, 401
MspR9I	CCNGG	3 cut(s)	94, 402, 473
MunI	CAATTG	1 cut(s)	47
MvaI	CCWGG	2 cut(s)	94, 473
MvnI	CGCG	2 cut(s)	77, 587
MwoI	GCNNNNNNNGC	2 cut(s)	500, 587
NciI	CCSGG	1 cut(s)	402
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	331
NlaIII	CATG	2 cut(s)	457, 543
NlaIV	GGNNCC	3 cut(s)	99, 502, 503
NmuCI	GTSAC	1 cut(s)	637
PfeI	GAWTC	3 cut(s)	136, 224, 435
PflMI	CCANNNNNTGG	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	65, 424, 589, 645
Psp6I	CCWGG	2 cut(s)	92, 471
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	92, 471
PspN4I	GGNNCC	3 cut(s)	99, 502, 503
PspOMI	GGGCCC	1 cut(s)	501
PspPI	GGNCC	3 cut(s)	501, 502, 651
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	80, 267, 489
RsaNI	GTAC	3 cut(s)	79, 266, 488
SaqAI	TTAA	2 cut(s)	429, 441
SatI	GCNGC	4 cut(s)	64, 423, 588, 644
Sau96I	GGNCC	3 cut(s)	501, 502, 651
ScrFI	CCNGG	3 cut(s)	94, 402, 473
SduI	GDGCHC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	6 cut(s)	47, 88, 102, 126, 296, 312
SsiI	CCGC	1 cut(s)	587
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	92, 400, 471
StyI	CCWWGG	2 cut(s)	12, 453
TaaI	ACNGT	2 cut(s)	537, 550
TaqI	TCGA	1 cut(s)	154
TasI	AATT	6 cut(s)	47, 88, 102, 126, 296, 312
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	136, 224, 435
Tru1I	TTAA	2 cut(s)	429, 441
Tru9I	TTAA	2 cut(s)	429, 441
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	63, 422, 643
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	459
XapI	RAATTY	3 cut(s)	88, 126, 312
XspI	CTAG	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.