pycom02g23150

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0007248
Physical Location & Seq
Forward (+)
21302413 .. 21303995
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23150.1

Sequence Viewer

Length: 408 bp
ATGTTGGCGCGCTCAAAAGCTGTCTGCGTCTCCTCCTCCAATCTCTCTCTTTCTCTCCCCATCATGCCTCCTTCCTTGGCGCTCACAACGCTCTCCATTCCCCTTCTGCAATTGCATAACACGGGCTGCAATGAGTTTGCGTACTTGAAAAATTCCTGGGTTCCAATTTCATCGCCTAAGCTCACCCAAATTTCTCTGAATCAGAAGAACCGGTTTCGACATTTCTCGTCAGCCAATGGCAACAACAATGATTATGGTTTGTCAGGTGCTGAAAGCTTCTCTGCTGAATCTGAAGGTTCAGTTGGAAAGATTGATAGTGGACAAGGAGTACCTTTCACATCCAATGAGTACTTTCTATTTGCCTTACAATGTTTTTGGTTCATACTAAAGGCTACTGATTGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.69

Weight (kDa)

7.62

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AcsI RAATTY 2 cut(s) 151, 189
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 3 cut(s) 143, 330, 350
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 20, 181, 276
AluI AGCT 3 cut(s) 20, 181, 276
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 2 cut(s) 151, 189
AsiGI ACCGGT 1 cut(s) 210
AspLEI GCGC 3 cut(s) 10, 12, 82
AsuHPI GGTGA 1 cut(s) 175
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 75, 156
BsaWI WCCGGW 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 75, 156
BseGI GGATG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 136
BsePI GCGCGC 1 cut(s) 8
BseRI GAGGAG 2 cut(s) 22, 25
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 10
BshTI ACCGGT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 75, 156
BssHII GCGCGC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 3 cut(s) 10, 12, 82
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 3 cut(s) 10, 12, 82
Cfr10I RCCGGY 1 cut(s) 210
CseI GACGC 1 cut(s) 16
Csp6I GTAC 3 cut(s) 142, 329, 349
CspAI ACCGGT 1 cut(s) 210
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 20, 126, 181, 233, 276, 392
CviKI_1 RGCY 6 cut(s) 20, 126, 181, 233, 276, 392
CviQI GTAC 3 cut(s) 142, 329, 349
DdeI CTNAG 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 1 cut(s) 67
FaiI YATR 4 cut(s) 65, 117, 255, 383
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 127
GlaI GCGC 3 cut(s) 9, 11, 81
GluI GCNGC 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 83
HapII CCGG 1 cut(s) 211
HgaI GACGC 1 cut(s) 16
HhaI GCGC 3 cut(s) 10, 12, 82
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 3 cut(s) 8, 10, 80
HinP1I GCGC 3 cut(s) 8, 10, 80
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 2 cut(s) 199, 287
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 198, 204, 292
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 81, 113, 287
HpyCH4V TGCA 3 cut(s) 109, 115, 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 3 cut(s) 8, 10, 80
LpnPI CCDG 4 cut(s) 142, 169, 224, 249
Lsp1109I GCAGC 1 cut(s) 113
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 110
MluCI AATT 4 cut(s) 110, 151, 165, 189
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 3 cut(s) 43, 46, 78
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 162
PauI GCGCGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 199, 287
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 269
PteI GCGCGC 1 cut(s) 8
RsaI GTAC 3 cut(s) 143, 330, 350
RsaNI GTAC 3 cut(s) 142, 329, 349
SatI GCNGC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 157
SetI ASST 6 cut(s) 22, 183, 268, 278, 298, 334
Sse9I AATT 4 cut(s) 110, 151, 165, 189
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 217
TasI AATT 4 cut(s) 110, 151, 165, 189
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 2 cut(s) 199, 287
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 159, 370
XapI RAATTY 2 cut(s) 151, 189
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.