FvH4_6g11251

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007248
Physical Location & Seq
Forward (+)
6702786 .. 6704629
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11251.t1

Sequence Viewer

Length: 639 bp
ATGGCTTGTTGCCTGGCTCTGCCTCATATTCCTGTTTTGCATCCCCTGGGCCGCAATAAATATTCATACCTGAGAAAACCCTGCATTTCGTTGCCAAAGCTTGGCTACGGTTCACTGAATCGGAACAAGTTTCGACATTTGTCTTCAATTGATGGCAACAATACCGGTGGTAGAGGTTTGTCTGATGCTGAAAGCTTCTCCTCTAAACCTGAAGATTCAAGGGGGAATAGTGATAGTGGTCAAGGAGGTGCTGCCACATCTAATGAGACTTTGACGAAACTGAGGAGATATGGGATTGCTGGATTGTTGTCATATGGGTTATTGAATACTGCCTACTATCTTACGACATTTCTCATCGTCTGGTTCTATGTTGCTCCTGCGCCTGGAAGGATGGGTTACCTTGCAGCTGCTCAGCGATTTCTTAAAATAATGGCCATGGTGTGGGCTGGTAGCCAGGTTACTAAGCTTATTCGAGCTGGAGGAGCCCTTGCTCTTGCTCCTTTTGTGGACAGGGGATTATCTTGGTTCACTGTCAAGTTCCATTTTAAGTCTCAGGGAAAGGCTTTTGCAGCAATTGTTGGTGTTTGCTTGGGACTGGCTTTGGTTTTATTTTTTGCTGTAACATTGCTTTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.83

Weight (kDa)

10.02

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 101, 441
AciI CCGC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 101, 383, 441
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 3 cut(s) 147, 219, 325
AjnI CCWGG 4 cut(s) 12, 45, 382, 453
AluBI AGCT 6 cut(s) 100, 195, 407, 466, 476, 635
AluI AGCT 6 cut(s) 100, 195, 407, 466, 476, 635
Alw26I GTCTC 2 cut(s) 260, 555
AoxI GGCC 2 cut(s) 49, 432
ApeKI GCWGC 4 cut(s) 251, 404, 407, 569
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 434
BanII GRGCYC 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 4 cut(s) 238, 394, 416, 581
BccI CCATC 2 cut(s) 146, 385
BciT130I CCWGG 4 cut(s) 14, 47, 384, 455
BcoDI GTCTC 2 cut(s) 260, 555
BisI GCNGC 5 cut(s) 52, 252, 405, 408, 570
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 5 cut(s) 53, 253, 406, 409, 571
Bme1390I CCNGG 4 cut(s) 14, 47, 384, 455
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 4 cut(s) 14, 47, 384, 455
BmsI GCATC 2 cut(s) 49, 175
BoxI GACNNNNGTC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 45, 46, 435
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 383, 441
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 623
BseBI CCWGG 4 cut(s) 14, 47, 384, 455
BseDI CCNNGG 3 cut(s) 45, 46, 435
BseGI GGATG 2 cut(s) 40, 396
BseLI CCNNNNNNNGG 3 cut(s) 101, 383, 441
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 4 cut(s) 62, 272, 425, 566
BseNI ACTGG 1 cut(s) 600
BseRI GAGGAG 3 cut(s) 190, 298, 495
BseXI GCAGC 4 cut(s) 238, 394, 416, 581
BshFI GGCC 2 cut(s) 51, 434
BshTI ACCGGT 1 cut(s) 164
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 3 cut(s) 101, 383, 441
BsmAI GTCTC 2 cut(s) 260, 555
BsmFI GGGAC 1 cut(s) 606
BsnI GGCC 2 cut(s) 51, 434
Bsp1286I GDGCHC 1 cut(s) 487
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 1 cut(s) 52
BspANI GGCC 2 cut(s) 51, 434
BspCNI CTCAG 4 cut(s) 63, 273, 424, 565
BspLI GGNNCC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 600
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 45, 46, 435
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 4 cut(s) 14, 47, 384, 455
Bst4CI ACNGT 2 cut(s) 110, 532
BstDEI CTNAG 5 cut(s) 71, 281, 411, 462, 552
BstDSI CCRYGG 1 cut(s) 435
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 2 cut(s) 40, 396
BstHHI GCGC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 260, 555
BstMWI GCNNNNNNNGC 2 cut(s) 482, 569
BstNI CCWGG 4 cut(s) 14, 47, 384, 455
BstPAI GACNNNNGTC 1 cut(s) 139
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 4 cut(s) 12, 45, 382, 453
BstV1I GCAGC 4 cut(s) 238, 394, 416, 581
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 51, 434
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 40, 396
BtsIMutI CAGTG 2 cut(s) 113, 528
CfoI GCGC 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 1 cut(s) 436
DdeI CTNAG 5 cut(s) 71, 281, 411, 462, 552
EaeI YGGCCR 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 395
EcoO65I GGTNACC 1 cut(s) 395
EcoRII CCWGG 4 cut(s) 12, 45, 382, 453
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 1 cut(s) 439
FaiI YATR 7 cut(s) 27, 67, 291, 313, 315, 369, 437
FaqI GGGAC 1 cut(s) 606
FatI CATG 1 cut(s) 435
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 5 cut(s) 52, 252, 405, 408, 570
FokI GGATG 2 cut(s) 27, 403
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 5 cut(s) 52, 252, 405, 408, 570
GlaI GCGC 1 cut(s) 381
GluI GCNGC 5 cut(s) 52, 252, 405, 408, 570
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 51, 434
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 382
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HindIII AAGCTT 3 cut(s) 98, 193, 464
HinfI GANTC 2 cut(s) 118, 215
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 113, 508, 528
Hpy188I TCNGA 2 cut(s) 123, 184
Hpy8I GTNNAC 3 cut(s) 113, 508, 528
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 2 cut(s) 110, 532
HpyCH4V TGCA 4 cut(s) 40, 84, 404, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 569
HpyF3I CTNAG 5 cut(s) 71, 281, 411, 462, 552
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 1 cut(s) 380
LmnI GCTCC 3 cut(s) 379, 482, 502
Lsp1109I GCAGC 4 cut(s) 238, 394, 416, 581
LweI GCATC 2 cut(s) 49, 175
MaeIII GTNAC 3 cut(s) 395, 457, 619
MboII GAAGA 2 cut(s) 135, 224
MfeI CAATTG 2 cut(s) 147, 573
MhlI GDGCHC 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 2 cut(s) 147, 573
MluNI TGGCCA 1 cut(s) 434
MnlI CCTC 6 cut(s) 33, 167, 211, 239, 276, 473
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 3 cut(s) 423, 546, 637
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 4 cut(s) 14, 47, 384, 455
MunI CAATTG 2 cut(s) 147, 573
MvaI CCWGG 4 cut(s) 14, 47, 384, 455
MwoI GCNNNNNNNGC 2 cut(s) 482, 569
NcoI CCATGG 1 cut(s) 435
NdeI CATATG 1 cut(s) 313
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 1 cut(s) 484
PasI CCCWGGG 1 cut(s) 46
PfeI GAWTC 2 cut(s) 118, 215
PflMI CCANNNNNTGG 2 cut(s) 101, 441
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 5 cut(s) 53, 253, 406, 409, 571
PshAI GACNNNNGTC 1 cut(s) 139
Psp6I CCWGG 4 cut(s) 12, 45, 382, 453
PspEI GGTNACC 1 cut(s) 395
PspGI CCWGG 4 cut(s) 12, 45, 382, 453
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 423, 546, 637
SatI GCNGC 5 cut(s) 52, 252, 405, 408, 570
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 4 cut(s) 14, 47, 384, 455
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 2 cut(s) 49, 175
Sse9I AATT 2 cut(s) 147, 573
SsiI CCGC 1 cut(s) 52
SspI AATATT 1 cut(s) 62
StyD4I CCNGG 4 cut(s) 12, 45, 382, 453
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 110, 532
TaqI TCGA 2 cut(s) 133, 472
TasI AATT 2 cut(s) 147, 573
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 118, 215
Tru1I TTAA 3 cut(s) 423, 546, 637
Tru9I TTAA 3 cut(s) 423, 546, 637
TscAI CASTG 2 cut(s) 120, 535
TseI GCWGC 4 cut(s) 251, 404, 407, 569
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 2 cut(s) 120, 535
Van91I CCANNNNNTGG 2 cut(s) 101, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.