Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007248

Physical Location & Seq

Genomic Coordinates Reverse (-)

5715119 .. 5721970

Gene Structure 6852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G049700.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCCCGTTCCCTGGCGCTCACAGCTGTTTCTATTCCCCTTCTGCATAAACCGGGCTGCTATGAGTTCTCGTACTTGAGCAACTCATGGGTTTCATTGACAAAGCTCAGCCACGTTTCGCTGAATCAGAAGAACCAATTTCAGCGATTCTCCCTAGTCAATGGCAACGACAATGTCAATGGTTATGGGTTGTCGGATGCTGAAAGCTTCTCCACTAAATCTCAAGGGGCAATTGGAAATAGTGATAGTGGTGAAGGAGTACCTGTCACATCCAATGAGATTTTGAAGAAGTTAAGGAGATATGGGATTTCTGGATTATTGTCATATGGACTACTGAATACTGCTTACTATCTTACGACATTTCTCTTGGTATGGTTCTATGTTGCTCCAGCACCTGGGAGGATGGGTTACGTCCCAGCTGTTCAGAGATTTCTCAAAATAATGGCCATGGTGTGGGCCGGAAGCCAGGTCACCAAGCTTGTACGAGCTGGTGGGGCCCTTGCTCTTGCTCCTTTGGTAGACAGGGGACTGTCATGGTTCAGTGTCAAGTTCCATTTTGAGTCTCAGGGCAAGGCTTTCACCGCAATTGTTGGAATTTGCTTCGGACTAGCCCTCGTTTTATTTTTTGTTGTGACGTTGCTTTGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.59

Weight (kDa)

9.7

Isoelectric Point (pI)

19.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38695 AT2G38695 AT2G38695 AT2G38695
fragaria_vesca	FvH4_6g11251
malus_domestica	MD02G1270600.v1.1
prunus_persica	Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1
pyrus_communis	pycom02g23150
rosa_chinensis	RchiOBHm_Chr3g0462781
rosa_laevigata	RLG00000024833
rosa_multiflora	Rmu_sc0000766.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417210
rosa_rugosa	Rorug03G0059200
rosa_samantha	Rh3AG117200 Rh3BG121000 Rh3CG123900 Rh3DG122600
rosa_wichuraiana	Rw3G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	395, 453
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	582
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	594
AfaI	GTAC	3 cut(s)	74, 261, 483
AfiI	CCNNNNNNNGG	3 cut(s)	13, 395, 453
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	12, 394, 465
AluBI	AGCT	6 cut(s)	26, 106, 207, 419, 478, 488
AluI	AGCT	6 cut(s)	26, 106, 207, 419, 478, 488
Alw26I	GTCTC	1 cut(s)	567
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	444, 456, 495, 645
ApaI	GGGCCC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	4 cut(s)	456, 495, 496, 645
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	3 cut(s)	263, 463, 571
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	3 cut(s)	14, 396, 467
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	2 cut(s)	155, 608
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	4 cut(s)	14, 54, 396, 467
BmgT120I	GGNCC	4 cut(s)	456, 495, 496, 645
BmiI	GGNNCC	2 cut(s)	496, 497
BmrFI	CCNGG	4 cut(s)	14, 54, 396, 467
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	2 cut(s)	97, 207
BpuMI	CCSGG	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	12, 395, 447
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 391, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 395, 453
BseBI	CCWGG	3 cut(s)	14, 396, 467
BseDI	CCNNGG	3 cut(s)	12, 395, 447
BseGI	GGATG	3 cut(s)	202, 269, 408
BseLI	CCNNNNNNNGG	3 cut(s)	13, 395, 453
BseMII	CTCAG	2 cut(s)	121, 578
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	415
BshFI	GGCC	4 cut(s)	446, 458, 497, 647
BsiSI	CCGG	2 cut(s)	53, 459
BslFI	GGGAC	2 cut(s)	398, 540
BslI	CCNNNNNNNGG	3 cut(s)	13, 395, 453
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	398, 540
BsnI	GGCC	4 cut(s)	446, 458, 497, 647
Bsp120I	GGGCCC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1720I	GCTNAGC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	4 cut(s)	446, 458, 497, 647
BspCNI	CTCAG	2 cut(s)	120, 577
BspLI	GGNNCC	2 cut(s)	496, 497
BssECI	CCNNGG	3 cut(s)	12, 395, 447
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	3 cut(s)	14, 396, 467
Bst4CI	ACNGT	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	107, 564
BstDSI	CCRYGG	1 cut(s)	447
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	3 cut(s)	202, 269, 408
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 494, 581
BstNI	CCWGG	3 cut(s)	14, 396, 467
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	4 cut(s)	12, 52, 394, 465
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	446, 458, 497, 647
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	3 cut(s)	202, 269, 408
BtsIMutI	CAGTG	1 cut(s)	547
CaiI	CAGNNNCTG	1 cut(s)	395
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	4 cut(s)	456, 495, 496, 645
Csp6I	GTAC	3 cut(s)	73, 260, 482
CviAII	CATG	3 cut(s)	87, 448, 534
CviQI	GTAC	3 cut(s)	73, 260, 482
DdeI	CTNAG	2 cut(s)	107, 564
EaeI	YGGCCR	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	499
Eco91I	GGTNACC	1 cut(s)	469
EcoO109I	RGGNCCY	2 cut(s)	495, 496
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	12, 394, 465
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	90, 451, 537
FaqI	GGGAC	2 cut(s)	398, 540
FatI	CATG	3 cut(s)	86, 447, 533
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	3 cut(s)	209, 256, 415
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	2 cut(s)	155, 608
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	4 cut(s)	446, 458, 497, 647
HapII	CCGG	2 cut(s)	53, 459
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	90, 451, 537
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	2 cut(s)	205, 476
HinfI	GANTC	3 cut(s)	124, 147, 560
HpaII	CCGG	2 cut(s)	53, 459
HphI	GGTGA	3 cut(s)	263, 463, 571
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	4 cut(s)	129, 196, 426, 605
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	50, 248
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	3 cut(s)	114, 411, 635
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 494, 581
HpyF3I	CTNAG	2 cut(s)	107, 564
HpySE526I	ACGT	3 cut(s)	114, 411, 635
Hsp92II	CATG	3 cut(s)	90, 451, 537
HspAI	GCGC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	391, 514
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	155, 608
MaeII	ACGT	3 cut(s)	114, 411, 635
MaeIII	GTNAC	4 cut(s)	265, 407, 469, 631
MboII	GAAGA	2 cut(s)	142, 298
MfeI	CAATTG	2 cut(s)	231, 585
MhlI	GDGCHC	1 cut(s)	499
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	4 cut(s)	137, 231, 585, 594
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	174, 571
MnlI	CCTC	2 cut(s)	393, 623
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	26, 419
MspI	CCGG	2 cut(s)	53, 459
MspR9I	CCNGG	4 cut(s)	14, 54, 396, 467
MunI	CAATTG	2 cut(s)	231, 585
MvaI	CCWGG	3 cut(s)	14, 396, 467
MwoI	GCNNNNNNNGC	3 cut(s)	23, 494, 581
NciI	CCSGG	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	447
NdeI	CATATG	1 cut(s)	325
NlaIII	CATG	3 cut(s)	90, 451, 537
NlaIV	GGNNCC	2 cut(s)	496, 497
NmuCI	GTSAC	3 cut(s)	265, 469, 631
PfeI	GAWTC	2 cut(s)	124, 147
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	2 cut(s)	395, 453
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	12, 394, 465
PspEI	GGTNACC	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	3 cut(s)	12, 394, 465
PspN4I	GGNNCC	2 cut(s)	496, 497
PspOMI	GGGCCC	1 cut(s)	495
PspPI	GGNCC	4 cut(s)	456, 495, 496, 645
PstNI	CAGNNNCTG	1 cut(s)	395
PsyI	GACNNNGTC	1 cut(s)	173
PvuII	CAGCTG	2 cut(s)	26, 419
RsaI	GTAC	3 cut(s)	74, 261, 483
RsaNI	GTAC	3 cut(s)	73, 260, 482
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	1 cut(s)	58
Sau96I	GGNCC	4 cut(s)	456, 495, 496, 645
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	4 cut(s)	14, 54, 396, 467
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	76, 222
SmoI	CTYRAG	2 cut(s)	76, 222
Sse9I	AATT	4 cut(s)	137, 231, 585, 594
SsiI	CCGC	1 cut(s)	582
SspMI	CTAG	2 cut(s)	155, 608
StyD4I	CCNGG	4 cut(s)	12, 52, 394, 465
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	3 cut(s)	117, 414, 638
TasI	AATT	4 cut(s)	137, 231, 585, 594
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	3 cut(s)	265, 469, 631
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	3 cut(s)	265, 469, 631
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	2 cut(s)	395, 453
XapI	RAATTY	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	2 cut(s)	155, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.