Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007248

Physical Location & Seq

Genomic Coordinates Forward (+)

9969163 .. 9969795

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTGTTCCGTGGCTTTCCCTATTCCTATTTTGCATCCCCTGGTCTGCAATAAATTTTTGTACCTGAGCAACCCCTGCATTTCCTTGCCAAAGCTTGGCTACAGTTCACTGAATCAGAATCGATTTCGACGATTGTCTTCCATCGATGGCAACAACACTGGTAGTGGTTTGTCTGATGCCGACAGCTTCTCCTCTAGGCCTGAAGATTCAAGTGGAAATAGTGATAGTGGTCAAGCAGGCGCTGTGACCTCTAATGAGACTTTGAAGAAACTGAGGAGATATGGGATTGCTGGATTGTTGTCATATGGGTTATTGAATACTGCCTACTATCTTACGACATTTCTCTTTGTGTGGTTCTATGTTGCACCAACACCTGGAAGGATGGGTTACCTTGCTGCTGCTCAGCGATTTCTTAAAATAATGGCCATGGTGTGGGCTGGTAGCCAGGTTACTAAGCTTATACGAGCTGGAGGAGCCCTTGCTCTTGCTCCTTTTGTGGACAGGGGATTGTCTTGGTTCACTATCAAGTTCCATTTTGAGTCTCAGGGAAAGGCTTTTGCGGCAATTGTTGGAGTTTGCTTTGGACTGGCCTTGGTTTTGTTTTTCGCTGTAACATTGCTTTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.78

Weight (kDa)

9.62

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38695 AT2G38695 AT2G38695 AT2G38695
fragaria_vesca	FvH4_6g11251
malus_domestica	MD02G1270600.v1.1
prunus_persica	Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1 Prupe.2G049700_v2.0.a1
pyrus_communis	pycom02g23150
rosa_chinensis	RchiOBHm_Chr3g0462781
rosa_laevigata	RLG00000024833
rosa_multiflora	Rmu_sc0000766.1_g000005
rosa_roxburghii	Rroxscaffold_6G00417210
rosa_rugosa	Rorug03G0059200
rosa_samantha	Rh3AG117200 Rh3BG121000 Rh3CG123900 Rh3DG122600
rosa_wichuraiana	Rw3G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	98, 377, 435
AciI	CCGC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	98, 377, 435
AgsI	TTSAA	3 cut(s)	213, 268, 319
AjnI	CCWGG	3 cut(s)	42, 376, 447
AluBI	AGCT	4 cut(s)	97, 189, 460, 470
AluI	AGCT	4 cut(s)	97, 189, 460, 470
Alw26I	GTCTC	2 cut(s)	254, 549
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	200, 426, 591
ApeKI	GCWGC	2 cut(s)	398, 401
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	385, 388
BccI	CCATC	3 cut(s)	143, 152, 379
BciT130I	CCWGG	3 cut(s)	44, 378, 449
BcoDI	GTCTC	2 cut(s)	254, 549
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	3 cut(s)	399, 402, 564
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	3 cut(s)	400, 403, 565
Bme1390I	CCNGG	3 cut(s)	44, 378, 449
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	3 cut(s)	44, 378, 449
BmsI	GCATC	2 cut(s)	46, 169
BoxI	GACNNNNGTC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu1102I	GCTNAGC	1 cut(s)	405
Bsa29I	ATCGAT	2 cut(s)	124, 147
BsaJI	CCNNGG	4 cut(s)	12, 42, 429, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 377, 435
Bse1I	ACTGG	2 cut(s)	166, 594
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	3 cut(s)	44, 378, 449
BseCI	ATCGAT	2 cut(s)	124, 147
BseDI	CCNNGG	4 cut(s)	12, 42, 429, 594
BseGI	GGATG	2 cut(s)	37, 390
BseLI	CCNNNNNNNGG	3 cut(s)	98, 377, 435
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	4 cut(s)	59, 266, 419, 560
BseNI	ACTGG	2 cut(s)	166, 594
BseRI	GAGGAG	3 cut(s)	184, 292, 489
BseXI	GCAGC	2 cut(s)	385, 388
BshFI	GGCC	3 cut(s)	202, 428, 593
BshVI	ATCGAT	2 cut(s)	124, 147
BslI	CCNNNNNNNGG	3 cut(s)	98, 377, 435
BsmAI	GTCTC	2 cut(s)	254, 549
BsnI	GGCC	3 cut(s)	202, 428, 593
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	3 cut(s)	202, 428, 593
BspCNI	CTCAG	4 cut(s)	60, 267, 418, 559
BspDI	ATCGAT	2 cut(s)	124, 147
BspLI	GGNNCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	166, 594
BssECI	CCNNGG	4 cut(s)	12, 42, 429, 594
BssT1I	CCWWGG	2 cut(s)	429, 594
Bst2UI	CCWGG	3 cut(s)	44, 378, 449
Bst4CI	ACNGT	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	5 cut(s)	68, 275, 405, 456, 546
BstDSI	CCRYGG	2 cut(s)	12, 429
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	37, 390
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMAI	GTCTC	2 cut(s)	254, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 476, 563
BstNI	CCWGG	3 cut(s)	44, 378, 449
BstPAI	GACNNNNGTC	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	42, 376, 447
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	385, 388
BstV2I	GAAGAC	1 cut(s)	132
Bsu15I	ATCGAT	2 cut(s)	124, 147
BsuRI	GGCC	3 cut(s)	202, 428, 593
BsuTUI	ATCGAT	2 cut(s)	124, 147
BtgI	CCRYGG	2 cut(s)	12, 429
BtsCI	GGATG	2 cut(s)	37, 390
BtsIMutI	CAGTG	2 cut(s)	110, 159
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	245
ClaI	ATCGAT	2 cut(s)	124, 147
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	5 cut(s)	68, 275, 405, 456, 546
EaeI	YGGCCR	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	429, 594
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoRII	CCWGG	3 cut(s)	42, 376, 447
EcoT14I	CCWWGG	2 cut(s)	429, 594
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	429, 594
FaeI	CATG	1 cut(s)	433
FaiI	YATR	6 cut(s)	285, 307, 309, 363, 431, 464
FatI	CATG	1 cut(s)	429
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	399, 402, 564
FokI	GGATG	2 cut(s)	24, 397
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	3 cut(s)	399, 402, 564
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	3 cut(s)	399, 402, 564
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	202, 428, 593
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HindIII	AAGCTT	2 cut(s)	95, 458
HinfI	GANTC	4 cut(s)	115, 121, 209, 542
Hpy166II	GTNNAC	3 cut(s)	110, 502, 522
Hpy188I	TCNGA	2 cut(s)	120, 178
Hpy8I	GTNNAC	3 cut(s)	110, 502, 522
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	37, 51, 81, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 476, 563
HpyF3I	CTNAG	5 cut(s)	68, 275, 405, 456, 546
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	476, 496
Lsp1109I	GCAGC	2 cut(s)	385, 388
LweI	GCATC	2 cut(s)	46, 169
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	247, 389, 451, 613
MboII	GAAGA	3 cut(s)	132, 218, 280
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	481
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	56, 567
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	4 cut(s)	205, 262, 270, 467
Mox20I	TGGCCA	1 cut(s)	428
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	417, 631
Msp20I	TGGCCA	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	44, 378, 449
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	3 cut(s)	44, 378, 449
MwoI	GCNNNNNNNGC	3 cut(s)	78, 476, 563
NcoI	CCATGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	307
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	115, 121, 209
PflMI	CCANNNNNTGG	3 cut(s)	98, 377, 435
PkrI	GCNGC	3 cut(s)	400, 403, 565
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	136
Psp6I	CCWGG	3 cut(s)	42, 376, 447
PspEI	GGTNACC	1 cut(s)	389
PspGI	CCWGG	3 cut(s)	42, 376, 447
PspN4I	GGNNCC	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	417, 631
SatI	GCNGC	3 cut(s)	399, 402, 564
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	3 cut(s)	44, 378, 449
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	9 cut(s)	69, 99, 191, 254, 379, 396, 453, 462, 472
SfaNI	GCATC	2 cut(s)	46, 169
SfcI	CTRYAG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	56, 567
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	42, 376, 447
StyI	CCWWGG	2 cut(s)	429, 594
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	124, 130, 147
TasI	AATT	2 cut(s)	56, 567
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	3 cut(s)	115, 121, 209
Tru1I	TTAA	2 cut(s)	417, 631
Tru9I	TTAA	2 cut(s)	417, 631
TscAI	CASTG	2 cut(s)	117, 166
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	398, 401
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	2 cut(s)	117, 166
Van91I	CCANNNNNTGG	3 cut(s)	98, 377, 435
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.