AT2G39920
ERF Family

HAD superfamily, subfamily IIIB (Acid phosphatase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005130
Physical Location & Seq
Reverse (-)
16663017 .. 16664539
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39920.4

Sequence Viewer

Length: 852 bp
ATGTCGGCTTATACGCATCCGATGGAGAGGGAGCTCTCCGGTCTATCCAGCCGAGGCAATTCCGAATTGGGGAGTCGGTATTCGATAGAATCTGGATGTTACATGACATCTTTAGCAGCTTCCATCTTCATAGCTTCTCTAGTAACATTTGGAGTTTTGATGATAACACTTCTTATTGCTTTATCAACCATGTTACAAAGCTGTGAGAACCGGAATATTGCAATCGTCGAGGCTCAAAGACTCGATGAGAGTTTCGGTTACTGTAAAATCTTGTCTTTACACTCTCAGCTCAATAGCTTGGATGAAGAAAGTGAATTACCACTGTTATGTAGAGATGTTGCTTTACACAGAATCAAACAAGGAATTTACTTGAGAGAGTTAAACTTCACTATTCAAATGGCTCTCACTTATTTCCAAACCATCAAACCGATGAATGATAACTGCGATGTTGTTGTGATCGATATTGATGACACCAATCTATTAGAACAAGATAGTTACTACATGAAGTATATTGAAGAAGCAAAGCATCAGAAAAGCATACTAATACTTGCACTATATTCTAAGCTTAGATCACAAGGCTATTCAATGGTTCTATTATCAAGAAGACCCGAAACAGAGCGGAACGCCACAATCGAGCAGTTAAAATCTAGAGGATACAGCGACTGGTCACATTTGATTATGAGCAGGGAAGATACAAGACAAAAGGAAGAGTTAGAAAGAGGTCACCGCGTAATTGGAGTCATTGGTAATCATATGGATGTGTTAAGAGGCCAGTGGAATTGGCAAAGCAAGCGTCTGTTCAAACTTCCAAGCCTTACCTATGATGATGTTTTGGATTACAATGAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

283

Amino Acids

32.67

Weight (kDa)

5.71

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 81 - 275 1.3e-20 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 619
AccII CGCG 1 cut(s) 729
AciI CCGC 2 cut(s) 619, 727
AcsI RAATTY 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 4 cut(s) 395, 515, 585, 802
AluBI AGCT 7 cut(s) 34, 119, 134, 201, 289, 297, 565
AluI AGCT 7 cut(s) 34, 119, 134, 201, 289, 297, 565
Alw21I GWGCWC 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 663
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 363
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
AsuHPI GGTGA 1 cut(s) 716
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 16, 131, 428
BciVI GTATCC 1 cut(s) 647
BfaI CTAG 2 cut(s) 140, 648
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmsI GCATC 2 cut(s) 25, 535
BpiI GAAGAC 1 cut(s) 610
BpuEI CTTGAG 1 cut(s) 391
Bsa29I ATCGAT 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 2 cut(s) 38, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 668, 772
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 4 cut(s) 16, 101, 307, 763
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 2 cut(s) 668, 772
BseXI GCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 1 cut(s) 771
BshVI ATCGAT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 39, 211
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 456, 569
BspACI CCGC 2 cut(s) 619, 727
BspANI GGCC 1 cut(s) 771
BspCNI CTCAG 1 cut(s) 298
BspDI ATCGAT 1 cut(s) 459
BspFNI CGCG 1 cut(s) 729
BsrBI CCGCTC 1 cut(s) 619
BsrI ACTGG 2 cut(s) 668, 772
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 456, 569
Bst4CI ACNGT 2 cut(s) 263, 324
Bst6I CTCTTC 1 cut(s) 702
BstC8I GCNNGC 1 cut(s) 791
BstDEI CTNAG 3 cut(s) 285, 561, 566
BstEII GGTNACC 1 cut(s) 722
BstF5I GGATG 4 cut(s) 16, 101, 307, 763
BstFNI CGCG 1 cut(s) 729
BstKTI GATC 2 cut(s) 459, 572
BstMBI GATC 2 cut(s) 456, 569
BstMWI GCNNNNNNNGC 1 cut(s) 790
BstPI GGTNACC 1 cut(s) 722
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 610
Bsu15I ATCGAT 1 cut(s) 459
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 1 cut(s) 771
BsuTUI ATCGAT 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 4 cut(s) 16, 101, 307, 763
BtsIMutI CAGTG 2 cut(s) 320, 779
Cac8I GCNNGC 1 cut(s) 791
CaiI CAGNNNCTG 1 cut(s) 663
ClaI ATCGAT 1 cut(s) 459
CseI GACGC 1 cut(s) 782
CviAII CATG 3 cut(s) 103, 190, 502
DdeI CTNAG 3 cut(s) 285, 561, 566
DpnI GATC 2 cut(s) 458, 571
DpnII GATC 2 cut(s) 456, 569
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
Eco91I GGTNACC 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 34
EcoO65I GGTNACC 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 3 cut(s) 106, 193, 505
FatI CATG 3 cut(s) 102, 189, 501
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 4 cut(s) 3, 108, 314, 770
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 140, 648
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 771
HapII CCGG 2 cut(s) 39, 211
HgaI GACGC 1 cut(s) 782
Hin1II CATG 3 cut(s) 106, 193, 505
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 5 cut(s) 73, 89, 240, 351, 738
HpaII CCGG 2 cut(s) 39, 211
HphI GGTGA 1 cut(s) 716
Hpy188I TCNGA 3 cut(s) 21, 64, 531
Hpy188III TCNNGA 3 cut(s) 93, 600, 648
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 263, 324
HpyCH4V TGCA 2 cut(s) 221, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 790
HpyF3I CTNAG 3 cut(s) 285, 561, 566
Hsp92II CATG 3 cut(s) 106, 193, 505
Kzo9I GATC 2 cut(s) 456, 569
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 52, 61, 78, 224, 649, 670, 785
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 2 cut(s) 25, 535
MaeI CTAG 2 cut(s) 140, 648
MaeIII GTNAC 7 cut(s) 98, 142, 192, 257, 494, 666, 722
MalI GATC 2 cut(s) 458, 571
MbiI CCGCTC 1 cut(s) 619
MboI GATC 2 cut(s) 456, 569
MboII GAAGA 6 cut(s) 118, 317, 527, 615, 701, 719
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 6 cut(s) 58, 65, 314, 363, 732, 778
MlyI GAGTC 3 cut(s) 82, 234, 747
MnlI CCTC 6 cut(s) 21, 47, 223, 644, 713, 761
MseI TTAA 3 cut(s) 380, 641, 764
MslI CAYNNNNRTG 2 cut(s) 325, 756
MspI CCGG 2 cut(s) 39, 211
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 1 cut(s) 790
NdeI CATATG 1 cut(s) 753
NdeII GATC 2 cut(s) 456, 569
NlaIII CATG 3 cut(s) 106, 193, 505
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 2 cut(s) 666, 722
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PfeI GAWTC 2 cut(s) 89, 351
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 3 cut(s) 81, 234, 746
PpsI GAGTC 3 cut(s) 81, 234, 746
Psp124BI GAGCTC 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 722
PstNI CAGNNNCTG 1 cut(s) 663
RseI CAYNNNNRTG 2 cut(s) 325, 756
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 380, 641, 764
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 456, 569
SchI GAGTC 3 cut(s) 82, 234, 747
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 36, 121, 136, 203, 291, 299, 567, 724, 821
SfaNI GCATC 2 cut(s) 25, 535
SmiMI CAYNNNNRTG 2 cut(s) 325, 756
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 6 cut(s) 58, 65, 314, 363, 732, 778
SsiI CCGC 2 cut(s) 619, 727
SspI AATATT 1 cut(s) 217
SspMI CTAG 2 cut(s) 140, 648
SstI GAGCTC 1 cut(s) 36
TaaI ACNGT 2 cut(s) 263, 324
TaqI TCGA 5 cut(s) 83, 228, 243, 459, 633
TasI AATT 6 cut(s) 58, 65, 314, 363, 732, 778
TfiI GAWTC 2 cut(s) 89, 351
Tru1I TTAA 3 cut(s) 380, 641, 764
Tru9I TTAA 3 cut(s) 380, 641, 764
TscAI CASTG 2 cut(s) 327, 779
TseFI GTSAC 2 cut(s) 666, 722
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 666, 722
TspDTI ATGAA 4 cut(s) 118, 318, 446, 518
TspRI CASTG 2 cut(s) 327, 779
XapI RAATTY 1 cut(s) 363
XbaI TCTAGA 1 cut(s) 647
XspI CTAG 2 cut(s) 140, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.