FvH4_7g23940
ERF Family

HAD superfamily, subfamily IIIB (Acid phosphatase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005130
Physical Location & Seq
Reverse (-)
18562791 .. 18566128
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23940.t3

Sequence Viewer

Length: 927 bp
ATGTCTGCTTATGGCCACCATATGGAGCAGGAATACTCCGCCCAGAGTCTTTCAAGTCGTGAAGGTTCTGAGAGGGCAAGCAGTTATGTAATGGAGTCAGGGTTCTACATGTCATCATTTGCTACAACGATCTTCATTGCTTCACTCGTTACAGTCGGGTTATTATTCATCACTTTGCTGATTGCACTGACGGTAATGCTGCAGTCTTGTGAAAGCAAGAGCCGTGGAGCTGTTGAGGCTCAGAAAGGAAGTTACGATTCAAATTACTGCCATCTCTTCTCTCTGCATATGGAACTCAACAACTTTGAGGCAGATCAGTTCCCTTCAGTATGCAGGGTTGTTGCTCTTCAGTACATCAAAGAAGGTCAATATGCAAGAGATTTAAATTCTACCATGTGGATGATTGAGGACTATTTTGGTAGTATTACCCCGCAACATGATGGGGATGTTGTGTTGATGGACGTTGATGACATTCTTTCTTCAGACCCCCAGTATAGTAATGTTTCCATGCACCGATATGATCACTATGGTTGTAGTGATTGTGTGGAAGAGGCAAAGCATCTGAAGCACATGCTTATTCTTAGACTATACATGAAGCTTCATGCTAATGGATGGCCTTTGATTTTGTTATCAAGAAAACCAGAGACACATAGGAATACCTCCGTAGAGTACCTTGTAACTGCAGGATTCACAGCTTGGTCTTCATTGATTTTGAGATCAGAAGCTGAACTGCATATGGATAGCAGTGACTACTTCTCTAGACGAAGGGCTACAATGCAGAGAGAAGGATTTCGCATAATGAGCATCATAAGCAGTCACATGGATGTTCTAAGAGGGCCACTTTTAGGAAAGCGTATTTTTAAGCTTCCTAACCCACTATATCACAATCTTGAACATCAAATTGAGGACACACATACACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

309

Amino Acids

35.27

Weight (kDa)

5.95

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 64 - 280 5.7e-26 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AciI CCGC 2 cut(s) 39, 431
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 4 cut(s) 309, 332, 465, 584
AfaI GTAC 2 cut(s) 353, 671
AfiI CCNNNNNNNGG 2 cut(s) 22, 845
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 3 cut(s) 54, 261, 893
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 5 cut(s) 230, 598, 695, 725, 865
AluI AGCT 5 cut(s) 230, 598, 695, 725, 865
Alw26I GTCTC 1 cut(s) 638
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 3 cut(s) 13, 614, 836
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 789
AspS9I GGNCC 1 cut(s) 836
BalI TGGCCA 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 693
BbvI GCAGC 1 cut(s) 186
BccI CCATC 4 cut(s) 279, 434, 451, 606
BceAI ACGGC 1 cut(s) 207
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 2 cut(s) 200, 681
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 836
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 568, 813
BmuI ACTGGG 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 693
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 845
Bse1I ACTGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 4 cut(s) 405, 451, 617, 829
BseLI CCNNNNNNNGG 2 cut(s) 22, 845
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 60, 254
BseNI ACTGG 1 cut(s) 490
BseXI GCAGC 1 cut(s) 186
BshFI GGCC 3 cut(s) 15, 616, 838
BslI CCNNNNNNNGG 2 cut(s) 22, 845
BsmAI GTCTC 1 cut(s) 638
BsnI GGCC 3 cut(s) 15, 616, 838
Bsp143I GATC 4 cut(s) 129, 313, 520, 716
BspACI CCGC 2 cut(s) 39, 431
BspANI GGCC 3 cut(s) 15, 616, 838
BspCNI CTCAG 2 cut(s) 61, 253
BspMAI CTGCAG 2 cut(s) 204, 685
BspQI GCTCTTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 129, 313, 520, 716
Bst4CI ACNGT 2 cut(s) 154, 193
Bst6I CTCTTC 3 cut(s) 281, 351, 543
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 4 cut(s) 69, 240, 581, 830
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 4 cut(s) 405, 451, 617, 829
BstKTI GATC 4 cut(s) 132, 316, 523, 719
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 4 cut(s) 129, 313, 520, 716
BstMWI GCNNNNNNNGC 4 cut(s) 236, 565, 801, 810
BstNSI RCATGY 2 cut(s) 112, 574
BstSFI CTRYAG 2 cut(s) 200, 681
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 693
BsuRI GGCC 3 cut(s) 15, 616, 838
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 4 cut(s) 405, 451, 617, 829
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 185, 751
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 725
Cfr13I GGNCC 1 cut(s) 836
Csp6I GTAC 2 cut(s) 352, 670
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 8 cut(s) 109, 394, 437, 508, 571, 592, 602, 820
CviQI GTAC 2 cut(s) 352, 670
DdeI CTNAG 4 cut(s) 69, 240, 581, 830
DpnI GATC 4 cut(s) 131, 315, 522, 718
DpnII GATC 4 cut(s) 129, 313, 520, 716
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 3 cut(s) 281, 351, 543
EarI CTCTTC 3 cut(s) 281, 351, 543
EciI GGCGGA 1 cut(s) 28
Eco57I CTGAAG 4 cut(s) 309, 332, 465, 584
FaeI CATG 8 cut(s) 112, 397, 440, 511, 574, 595, 605, 823
FatI CATG 8 cut(s) 108, 393, 436, 507, 570, 591, 601, 819
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 3 cut(s) 21, 288, 735
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 4 cut(s) 412, 458, 624, 836
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 759
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 3 cut(s) 15, 616, 838
Hin1II CATG 8 cut(s) 112, 397, 440, 511, 574, 595, 605, 823
HindIII AAGCTT 2 cut(s) 596, 863
HinfI GANTC 4 cut(s) 46, 95, 257, 687
Hpy188I TCNGA 5 cut(s) 70, 243, 484, 564, 721
Hpy188III TCNNGA 4 cut(s) 59, 633, 759, 890
HpyAV CCTTC 5 cut(s) 56, 333, 356, 759, 779
HpyCH4III ACNGT 2 cut(s) 154, 193
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 9 cut(s) 185, 202, 286, 333, 374, 511, 683, 733, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 565, 801, 810
HpyF3I CTNAG 4 cut(s) 69, 240, 581, 830
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 8 cut(s) 112, 397, 440, 511, 574, 595, 605, 823
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 4 cut(s) 129, 313, 520, 716
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 25, 227
LpnPI CCDG 7 cut(s) 14, 56, 84, 319, 503, 654, 669
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 2 cut(s) 568, 813
MaeI CTAG 1 cut(s) 759
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 5 cut(s) 148, 251, 676, 746, 815
MalI GATC 4 cut(s) 131, 315, 522, 718
MboI GATC 4 cut(s) 129, 313, 520, 716
MboII GAAGA 6 cut(s) 124, 268, 338, 471, 560, 693
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 3 cut(s) 262, 385, 900
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 2 cut(s) 55, 104
MnlI CCTC 8 cut(s) 66, 229, 301, 400, 544, 670, 827, 898
Mox20I TGGCCA 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 789
MscI TGGCCA 1 cut(s) 15
MseI TTAA 2 cut(s) 383, 861
MslI CAYNNNNRTG 4 cut(s) 398, 516, 606, 822
Msp20I TGGCCA 1 cut(s) 15
MwoI GCNNNNNNNGC 4 cut(s) 236, 565, 801, 810
NdeI CATATG 3 cut(s) 21, 288, 735
NdeII GATC 4 cut(s) 129, 313, 520, 716
NlaIII CATG 8 cut(s) 112, 397, 440, 511, 574, 595, 605, 823
NmuCI GTSAC 2 cut(s) 746, 815
NspI RCATGY 2 cut(s) 112, 574
PciI ACATGT 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 2 cut(s) 257, 687
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 2 cut(s) 54, 103
PpsI GAGTC 2 cut(s) 54, 103
PscI ACATGT 1 cut(s) 108
PspPI GGNCC 1 cut(s) 836
PstI CTGCAG 2 cut(s) 204, 685
PstNI CAGNNNCTG 1 cut(s) 725
RsaI GTAC 2 cut(s) 353, 671
RsaNI GTAC 2 cut(s) 352, 670
RseI CAYNNNNRTG 4 cut(s) 398, 516, 606, 822
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 383, 861
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 4 cut(s) 129, 313, 520, 716
Sau96I GGNCC 1 cut(s) 836
SchI GAGTC 2 cut(s) 55, 104
SfaNI GCATC 2 cut(s) 568, 813
SfcI CTRYAG 2 cut(s) 200, 681
SmiI ATTTAAAT 1 cut(s) 384
SmiMI CAYNNNNRTG 4 cut(s) 398, 516, 606, 822
Sse9I AATT 3 cut(s) 262, 385, 900
SsiI CCGC 2 cut(s) 39, 431
SspMI CTAG 1 cut(s) 759
SwaI ATTTAAAT 1 cut(s) 384
TaaI ACNGT 2 cut(s) 154, 193
TaiI ACGT 1 cut(s) 465
TasI AATT 3 cut(s) 262, 385, 900
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 2 cut(s) 257, 687
Tru1I TTAA 2 cut(s) 383, 861
Tru9I TTAA 2 cut(s) 383, 861
TscAI CASTG 2 cut(s) 192, 751
TseFI GTSAC 2 cut(s) 746, 815
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 2 cut(s) 746, 815
TspDTI ATGAA 5 cut(s) 124, 157, 590, 608, 693
TspGWI ACGGA 1 cut(s) 652
TspRI CASTG 2 cut(s) 192, 751
Van91I CCANNNNNTGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 385
XbaI TCTAGA 1 cut(s) 758
XceI RCATGY 2 cut(s) 112, 574
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.