Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005130

Physical Location & Seq

Genomic Coordinates Reverse (-)

21906738 .. 21907845

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCTGCCTATGGCCGTCATATGGAGCGGGAGTACTCCGCGCAGAGTCTTTCCAATGAAGGTTCAGAAAGGGCAAGCAGTTATGCCATGGAGACAGGATTCTACATGTCGTCTTTTGCTACGACAATCTTCATTGGCGCACTTATAACTGTTGGGCTCTTATTAATCGCCTTGCTGATTGCACTGACTGTAATGCTGCAGTCTTGCGAAAATAGGAGTCATGGAATCGTTGAGACTCATAACCCGAGTTTCGATTACAATCACTGCCAGATCTTGTCTCTGCATATGGAACTCAACGGTGAAGCAGATCACTTCCCTTCAATGTGCAGGGTTGTTGCCCTTCAGTACATCAAAGAAGGTCAATATGTAAGAGATTTAAATTCTACCATGTCAATGATTCAGAATTATTTCAGCGGCATTACCCCAGCACACGATGGTCTGGACGTGGTCTTGATCGACATAGATGACATTCGTTCTTCAAATCCTCGGCACATTAATTTGCCACTGCCCCAATATGATCAGTATGGTTGTAGTGATTGTGTGGAAGAGGCAAAGCATCTGAAGCACAGGTTTATTCTGAGATTATACATGGAACTTCATGCTAGCGGTTGGCCTTTGATTCTGCTATCAAGAAAGCCGGAGGCGGATCGGAATTCCTTCATAGAGCGATCTTATATCTGCAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

230

Amino Acids

26.06

Weight (kDa)

5.73

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39920 AT2G39920 AT2G39920 AT2G39920
fragaria_vesca	FvH4_7g23940 FvH4_7g23940 FvH4_7g23940 FvH4_7g23940
malus_domestica	MD01G1146100.v1.1 MD01G1146200.v1.1 MD07G1213100.v1.1
prunus_persica	Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1 Prupe.2G245400_v2.0.a1
pyrus_communis	pycom07g19590
rosa_chinensis	RchiOBHm_Chr1g0369271
rosa_laevigata	RLG00000027142
rosa_multiflora	Rmu_sc0001482.1_g000016
rosa_roxburghii	Rroxscaffold_4G00287800
rosa_rugosa	Rorug01G0349400
rosa_samantha	Rh1AG356400 Rh1BG320100 Rh1CG334000 Rh1DG350700
rosa_wichuraiana	Rw1G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	28
AccII	CGCG	1 cut(s)	41
AciI	CCGC	5 cut(s)	28, 39, 414, 606, 644
AclWI	GGATC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	379, 652
AcuI	CTGAAG	2 cut(s)	326, 581
AfaI	GTAC	2 cut(s)	35, 347
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	321, 480
AjiI	CACGTC	1 cut(s)	445
Alw26I	GTCTC	3 cut(s)	86, 227, 282
AlwI	GGATC	1 cut(s)	654
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	13, 611
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	379, 652
AseI	ATTAAT	2 cut(s)	164, 495
Asp700I	GAANNNNTTC	2 cut(s)	407, 656
AspLEI	GCGC	2 cut(s)	43, 140
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	1 cut(s)	428
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	86, 227, 282
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	2 cut(s)	197, 679
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	197, 415
BlsI	GCNGC	2 cut(s)	198, 416
BmcAI	AGTACT	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	445
BmsI	GCATC	1 cut(s)	565
BmtI	GCTAGC	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	87, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	87, 485
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	15, 613
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	86, 227, 282
BsnI	GGCC	2 cut(s)	15, 613
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	5 cut(s)	28, 39, 414, 606, 644
BspANI	GGCC	2 cut(s)	15, 613
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	2 cut(s)	201, 683
BspOI	GCTAGC	1 cut(s)	606
BspPI	GGATC	1 cut(s)	654
BsrBI	CCGCTC	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	87, 485
BssMI	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	151, 190, 299
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	76, 604
BstDEI	CTNAG	1 cut(s)	578
BstDSI	CCRYGG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	43, 140
BstKTI	GATC	6 cut(s)	273, 310, 456, 520, 649, 671
BstMAI	GTCTC	3 cut(s)	86, 227, 282
BstMBI	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNSI	RCATGY	1 cut(s)	109
BstSFI	CTRYAG	2 cut(s)	197, 679
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	15, 613
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	445
BtsI	GCAGTG	2 cut(s)	262, 503
BtsIMutI	CAGTG	3 cut(s)	182, 262, 503
Cac8I	GCNNGC	2 cut(s)	76, 604
CfoI	GCGC	2 cut(s)	43, 140
Csp6I	GTAC	2 cut(s)	34, 346
CviAII	CATG	6 cut(s)	88, 106, 221, 388, 589, 599
CviJI	RGCY	4 cut(s)	15, 157, 613, 637
CviKI_1	RGCY	4 cut(s)	15, 157, 613, 637
CviQI	GTAC	2 cut(s)	34, 346
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	6 cut(s)	272, 309, 455, 519, 648, 670
DpnII	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	659
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	326, 581
Eco88I	CYCGRG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	652
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	91, 109, 224, 391, 592, 602
FatI	CATG	6 cut(s)	87, 105, 220, 387, 588, 598
FauI	CCCGC	1 cut(s)	21
FauNDI	CATATG	2 cut(s)	21, 285
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	197, 415
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	197, 415
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	2 cut(s)	42, 139
GluI	GCNGC	2 cut(s)	197, 415
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	15, 613
HapII	CCGG	1 cut(s)	638
HhaI	GCGC	2 cut(s)	43, 140
Hin1II	CATG	6 cut(s)	91, 109, 224, 391, 592, 602
Hin6I	GCGC	2 cut(s)	41, 138
HinP1I	GCGC	2 cut(s)	41, 138
HinfI	GANTC	7 cut(s)	46, 99, 217, 225, 235, 397, 619
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	67, 402, 561, 579, 651
Hpy188III	TCNNGA	3 cut(s)	440, 451, 630
HpyAV	CCTTC	5 cut(s)	53, 327, 350, 350, 667
HpyCH4III	ACNGT	3 cut(s)	151, 190, 299
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	182, 199, 283, 327, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	6 cut(s)	91, 109, 224, 391, 592, 602
HspAI	GCGC	2 cut(s)	41, 138
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	81, 281, 313, 425, 438, 553, 651, 667
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	444
MalI	GATC	6 cut(s)	272, 309, 455, 519, 648, 670
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
MboII	GAAGA	3 cut(s)	121, 468, 557
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	379, 403, 496, 652
MlyI	GAGTC	3 cut(s)	55, 226, 229
MnlI	CCTC	3 cut(s)	495, 541, 634
MroXI	GAANNNNTTC	2 cut(s)	407, 656
MseI	TTAA	3 cut(s)	164, 377, 495
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	1 cut(s)	638
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	2 cut(s)	21, 285
NdeII	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
NheI	GCTAGC	1 cut(s)	602
NlaIII	CATG	6 cut(s)	91, 109, 224, 391, 592, 602
NmeAIII	GCCGAG	1 cut(s)	466
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	407, 656
PfeI	GAWTC	4 cut(s)	99, 225, 397, 619
PflFI	GACNNNGTC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	198, 416
PleI	GAGTC	3 cut(s)	54, 225, 229
PpsI	GAGTC	3 cut(s)	54, 225, 229
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	2 cut(s)	164, 495
PsiI	TTATAA	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	424
PstI	CTGCAG	2 cut(s)	201, 683
PsuI	RGATCY	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	446
RsaI	GTAC	2 cut(s)	35, 347
RsaNI	GTAC	2 cut(s)	34, 346
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	164, 377, 495
SatI	GCNGC	2 cut(s)	197, 415
Sau3AI	GATC	6 cut(s)	270, 307, 453, 517, 646, 668
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	3 cut(s)	55, 226, 229
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	64, 361, 447, 572
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	2 cut(s)	197, 679
SmiI	ATTTAAAT	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	4 cut(s)	379, 403, 496, 652
SsiI	CCGC	5 cut(s)	28, 39, 414, 606, 644
SspMI	CTAG	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	87
SwaI	ATTTAAAT	1 cut(s)	378
TaaI	ACNGT	3 cut(s)	151, 190, 299
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	2 cut(s)	252, 456
TasI	AATT	4 cut(s)	379, 403, 496, 652
TatI	WGTACW	2 cut(s)	33, 345
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	4 cut(s)	99, 225, 397, 619
Tru1I	TTAA	3 cut(s)	164, 377, 495
Tru9I	TTAA	3 cut(s)	164, 377, 495
TscAI	CASTG	3 cut(s)	189, 269, 510
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	72, 121, 587, 649
TspRI	CASTG	3 cut(s)	189, 269, 510
Tth111I	GACNNNGTC	1 cut(s)	446
VspI	ATTAAT	2 cut(s)	164, 495
XapI	RAATTY	2 cut(s)	379, 652
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	2 cut(s)	407, 656
XspI	CTAG	1 cut(s)	603
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.